1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGCTAAACTTATCCAGAGGGTATCTCCCAAGAGCTACCAACAAGCTCTTGCAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcaccctctgtttgcttctttacacacacacacacttcatttgcatgatgaaaaaagctatcatgtgtaatagtctatccactagtgttgatctc...
species | Zea mays |
transcript | GRMZM2G090087_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAG GTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGSTAACCATCTTGGACAAEST: gi|67040057|gb|CO466312.1|CO466312
genomic: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcacc ... ggtgtaacagGTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAA
EST: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAG GTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAAEST: gi|148958687|gb|EC904955.2|EC904955
genomic: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcacc ... ggtgtaacagGTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAA
EST: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAG GTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAAEST: gi|211228709|gb|FL216927.1|FL216927
genomic: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcacc ... ggtgtaacagGTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAA
EST: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAG GTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAAEST: gi|94472231|gb|EB701189.1|EB701189
genomic: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcacc ... ggtgtaacagGTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAA
EST: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAG GTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAAEST: gi|67026280|gb|CO455029.1|CO455029
genomic: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcacc ... ggtgtaacagGTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAA
EST: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAG GTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAAEST: gi|60399068|gb|DN231882.1|DN231882
genomic: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcacc ... ggtgtaacagGTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAA
EST: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAG GTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAAEST: gi|60346857|gb|DN213830.1|DN213830
genomic: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcacc ... ggtgtaacagGTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAA
EST: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAG GTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAAEST: gi|149071327|gb|EE159720.2|EE159720
genomic: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcacc ... ggtgtaacagGTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAA
EST: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAG GTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAAEST: gi|60339011|gb|DN205984.1|DN205984
genomic: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcacc ... ggtgtaacagGTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAA
EST: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAG GTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAA
genomic: CAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcacc ... ggtgtaacagGTACGCTTTCTGGCAAGGTCATTTGCTGTACCAGGTAACCATCTTGGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTAAACTTATCCAGAGGGTATCTCCCAAGAGCTACCAACAAGCTCTTGCAGAAGTTCAAGTTTCTCAAAAGTTTTTGGAAAACTTTTGTGGAGACCAGgtatttcaccctctgtttgcttctttacacacacacacacttcatttgcatgatgaaaaaagctatcatgtgtaatagtctatccactagtgttgatctc
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaaa