1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGCTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAGgttgtttattttcatcaacactacactgcaactttgagatcctctccttgtgagctgttcatgctatggccagttcagctaaacgccgccgtgtccgtgtcttgttttttgttttcag
species | Zea mays |
transcript | GRMZM2G088964_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAG ATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGGEST: gi|71442520|gb|DR823570.1|DR823570
genomic: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAGgttgtttatt ... ttgttttcagATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGG
EST: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAG ATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGGEST: gi|50330411|gb|CO525537.1|CO525537
genomic: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAGgttgtttatt ... ttgttttcagATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGG
EST: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAG ATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGGEST: gi|88757480|gb|DY541621.1|DY541621
genomic: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAGgttgtttatt ... ttgttttcagATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGG
EST: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAG ATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGGEST: gi|76288735|gb|DV028303.1|DV028303
genomic: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAGgttgtttatt ... ttgttttcagATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGG
EST: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAG ATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGGEST: gi|76936790|gb|DV174895.1|DV174895
genomic: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAGgttgtttatt ... ttgttttcagATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGG
EST: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAG ATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGGEST: gi|76283777|gb|DV023345.1|DV023345
genomic: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAGgttgtttatt ... ttgttttcagATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGG
EST: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAG ATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGGEST: gi|50333421|gb|CO528547.1|CO528547
genomic: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAGgttgtttatt ... ttgttttcagATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGG
EST: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAG ATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGG
genomic: CTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAGgttgtttatt ... ttgttttcagATAGCATTTCTGTCTAGCATATACCCTTCTCTGGTGCTCACATACGCTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCTGAAGCCATGTTTGCAGACCTTGGCCACTTCAGTAAGAAGGGTATTCAGgttgtttattttcatcaacactacactgcaactttgagatcctctccttgtgagctgttcatgctatggccagttcagctaaacgccgccgtgtccgtgtcttgttttttgttttcag
- CTGAAG
- - TGAAGC
- - - - - - - - - - - - - - - - - - - AAGAAG