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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGTGACGCAGGAAACCTTTTGACAAGGGCAGGCTTTACCCTTCCAGGAGTTGATGTTGATCAGTATACCGTTAGATACAATAATGgtttgtagaaaaaagaaagcttcagtttctgatgagtgttgtgtattgttcatcttcccttttccttacaatattacatgatggtagaataaacgtgtat...

Basic information

species Zea mays
transcript GRMZM2G087692_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G087692_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA04G43650.1 (Glycine max), 5'ss of exon 7
GTCCGTGACGCAGGAAACCTTTTGACAAGGGCAGGCTTTACCCTTCCAGGAGTTGATGTTGATCAGTATACCGTTAGATACAATAATGgtttgtagaaaaaagaaagcttcagtttctgatgagtgttgtgtattgttcatcttcccttttccttacaatattacatgatggtagaataaacgtgtat--
|| || || || || || |||||||| |||||||| || ||||||||||| |||||||||||| |||||   |||| |||  | | |||  ||   ||        | || | |   |||    |     ||      |||        |   |||  |         |   |       || | |||  
GTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGGGTTGATGTTGATGAGTATGTAGTTAAATATGAAAGTGg--tgagaaatttcatttgatttaataattgaattattccacgtgcgtgacatgaattaaatgaattatgagtgcgtcctaaattttttgctacatatattc

upper sequence: GRMZM2G087692_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA12G37130.2 (Glycine max), 5'ss of exon 8
GTCCGTGACGCAGGAAACCTTTTGACAAGGGCAGGCTTTACCCTTCCAGGAGTTGATGTTGATCAGTATACCGTTAGATACAATAATGgtttgtagaaaaaagaaagcttcagtttctgatgagtgttgtgtattgttcatcttcccttttccttacaatattacatgatggtagaataaacgtgtat--
|| || || || || || |||||||| |||||||| || ||||||||||| |||||||||||| | |||   |||| |||  | | |||  ||   ||        | || | |   |||    |     ||      |||        |   |||  |         |   |       || | |||  
GTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGTGTTGATGTTGATGATTATGTAGTTAAATATGAAAGTGg--tgagaaatttcatttgatttaataattgaattattccacgtgcgtgacatgaattaaatgaattatgagtgcgtcctaaattttttgctacatatattc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241981|gb|DT649895.1|DT649895
EST:     TTCCAGGAGTTGATGTTGATCAGTATACCGTTAGATACAATAATG                         CTTTGGAACTTGTTGAACATCTTAGAGCAATGGGGGAAACAAATGCTCTCT
genomic: TTCCAGGAGTTGATGTTGATCAGTATACCGTTAGATACAATAATGgtttgtagaa ... tgtcaactagCTTTGGAACTTGTTGAACATCTTAGAGCAATGGGGGAAACAAATGCTCTCT
EST: gi|78078319|gb|DV506734.1|DV506734
EST:     TACCCTTCCAGGAGTTGATGTTGATCAGTATACCGTTAGATACCATAATG                         CTTTGGAACTTGTTGAACATC
genomic: TACCCTTCCAGGAGTTGATGTTGATCAGTATACCGTTAGATACAATAATGgtttgtagaa ... tgtcaactagCTTTGGAACTTGTTGAACATC