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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATATAATCTCACAACCGTATGCTATCATTCTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttcttgcctatgacctgtcacttcgcttctgtgtagtgcttcttccttagttccttagtttgtgtactggtataactgtctgtggcttgtaatgaaattatttgtcgttgctgatttatttcgtatgtttag

Basic information

species Zea mays
transcript GRMZM2G086497_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086497_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g54920.1 (Oryza sativa), 5'ss of exon 5
GTTATATAATCTCACAACCGTATGCTATCATTCTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttcttgcctatgacctgtcacttcgcttctgtgtagtgcttcttccttagttccttagtttgtgtactggtata-actgtctgtggcttgtaatgaaattatttgtcg----ttgctgatttatttcgtatgtttag
||| || |||||||| |  ||||| |||||||||||||||||||| || || |||||||||||| |||||||||| ||||||||||    | |  |||   ||||    ||   |   |     ||| ||| |||  |    ||  ||| |   |  ||   ||  |||    ||| ||  |   || ||  ||     |||||| || || || |  || |||
GTTGTACAATCTCACCAGTGTATGTTATCATTCTCTTTACCTTCCACTTCTCTATGTGACTTTCCTAGCAGACTTTTTCCAGgtac----tagggtatcttctgttctatcaacttattactacgctgctttcttgatcttgtacattgggatattctacgtaccctcttgttcttatatagcttttcttcatcaaaaattgctggttcatgtc-tgagtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101731|gb|EE187868.2|EE187868
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTTTTAGCAGACTTTTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTTTACTATTTTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|149004863|gb|EE039371.2|EE039371
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTTTACTATTTTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|40334535|gb|CK368605.1|CK368605
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAC                         GAGGAAGACATGCTCCTAGAAAACGTCTACTTTTCTGAAATGAA
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAA
EST: gi|16919565|gb|BM074252.1|BM074252
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|211314374|gb|FL453743.1|FL453743
EST:     CTTTACCTTTCCCCTCCNTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         A
genomic: CTTTACCTT-CCCCTCC-TATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttag-
EST: gi|211314374|gb|FL453743.1|FL453743
EST:     CTTTACCTTTCCCCTCCNTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         A
genomic: CTTTACCTT-CCCCTCC-TATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttag-
EST: gi|32928610|gb|CF033422.1|CF033422
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|28982919|gb|BQ538440.2|BQ538440
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|91051590|gb|EB162008.1|EB162008
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTTTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|6865283|gb|AW360633.1|AW360633
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|116814069|gb|EC856569.1|EC856569
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|37376236|gb|CF624626.1|CF624626
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|149077476|gb|EE166172.2|EE166172
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|20507678|gb|BQ279726.1|BQ279726
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTATGAAATGAAGAGATGC
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAG-GATGC
EST: gi|211021098|gb|FL442866.1|FL442866
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|71310300|gb|DR791442.1|DR791442
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: gi|71306891|gb|DR789602.1|DR789602
EST:     CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG                         GAGGAAGACATGCTCCTAGAGAACGTCTACTATTTTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT