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GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatttacctagtttccatgggaaaagttgaaacaagtagatcactagcattaggggacattctcaacatagtgatttatttttcaaagctggaa...
species | Zea mays |
transcript | GRMZM2G086489_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGG GTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTGEST: gi|21809491|gb|BQ667809.1|BQ667809
genomic: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatt ... gtgtatctagGTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTG
EST: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGG GTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGCGCATTGEST: gi|211095653|gb|FK967022.1|FK967022
genomic: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatt ... gtgtatctagGTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTG
EST: GTTGCAAAGGTGGTAGATGAGCTAGTAGAAGAGCAGG GTGGGGAAACGTCTTGTTCCTGTTGGCCT-GGNAGACGATGATCAGTGCATEST: gi|148940766|gb|EC885587.2|EC885587
genomic: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatt ... gtgtatctagGTGGG-AAACGTCTTGTTCCTGTTGGCCTTGG-AGACGATGATCAGTGCAT
EST: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGG GTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTGEST: gi|148970820|gb|EE021584.2|EE021584
genomic: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatt ... gtgtatctagGTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTG
EST: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGG GTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTG
genomic: GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatt ... gtgtatctagGTGGGAAACGTCTTGTTCCTGTTGGCCTTGGAGACGATGATCAGTGCATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCAAAGGTGGTAGATGAGCTAGTAGAGGAGCAGGgtaagtaatttacctagtttccatgggaaaagttgaaacaagtagatcactagcattaggggacattctcaacatagtgatttatttttcaaagctggaa
- GCAAAG
- - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacaag