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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAGgtttgttcccatgattaagttcttattgtggttatccatcaccaactgagtttatagccattgcactgaataatctccctctccttctctctccccctccctccctccctgtacag

Basic information

species Zea mays
transcript GRMZM2G086052_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086052_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g40620.1 (Oryza sativa), 5'ss of exon 6
CACCAACCATAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAGgtttgttcccatgattaagtt--cttattgtggttatccatcaccaactgagtttatagccattgcactgaataatctccctctccttctctctccccctccctccctccctgtacag
  ||||| ||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| || |  ||  |  || |   | | ||   ||| |    ||| ||| || |  |||    |    |     | |   ||   | || |||   |  |                   
TGCCAACTATAATTATTGCACATGAATTCTATGATGCCTTGCCAATTCATCAATTTCAGgtctggttacaccagcaattccacctcttaatgttttgtgacacaaacagattgaatattgttcatgcattccactgaaccgtcctttttcttctcttcag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22542289|gb|BU092727.1|BU092727
EST:     TAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAG                         AAAGCATCACGTGGATGGTGCGAAAAGATGGTGGATATTGCAGAAGATTCT
genomic: TAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAGgtttgttccc ... ccctgtacagAAAGCATCACGTGGATGGTGCGAAAAGATGGTGGATATTGCAGAAGATTCT
EST: gi|26559508|gb|CA831743.1|CA831743
EST:     TAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAG                         AAAGCATCACGTGGATGGGGCGAAAAAGATGGTGGATATTGCAGAAGATTC
genomic: TAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAGgtttgttccc ... ccctgtacagAAAGCATCACGTGGATGGTGCG-AAAAGATGGTGGATATTGCAGAAGATTC
EST: gi|87156799|gb|DY401588.1|DY401588
EST:     TAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAG                         AAAGCATCACGTGGATGGTGCGAAAAGATGGTGGATATTGCAGAAGATTCT
genomic: TAATCATTGCACATGAATTCTATGATGCCTTACCAATCCATCAGTTTCAGgtttgttccc ... ccctgtacagAAAGCATCACGTGGATGGTGCGAAAAGATGGTGGATATTGCAGAAGATTCT