1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgcttatttaagaatttttctacatatagtaaatgtgcatgcttgcctaatacaacttttccacttctaaaaatgtgaatgcttgttttggta...
species | Zea mays |
transcript | GRMZM2G085670_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|93013201|gb|EB638721.1|EB638721
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|50325881|gb|CO521007.1|CO521007
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|101390708|gb|EB817288.1|EB817288
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|32927905|gb|CF032717.1|CF032717
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCEST: gi|86473889|gb|DY240259.1|DY240259
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCC
EST: ACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|71330909|gb|DR802251.1|DR802251
genomic: ACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|71306428|gb|DR789361.1|DR789361
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|33092814|gb|CF052808.1|CF052808
genomic: GATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACCATCAGATATTCTGTTGCATCAAATTCAGGAGAAAATCAAATEST: gi|74236689|gb|DT644603.1|DT644603
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAA-CATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAAT
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|76936648|gb|DV174824.1|DV174824
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|211512612|gb|FL228205.1|FL228205
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|89247571|gb|DY619357.1|DY619357
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|32928013|gb|CF032825.1|CF032825
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGA-CATCAGATAEST: gi|71423346|gb|DR806010.1|DR806010
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATA
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATGEST: gi|60359667|gb|DN226640.1|DN226640
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
EST: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTG GTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
genomic: GATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgc ... cattgttcagGTTGGGAACATCAGATAGCCTGTTGCATCAAATTCAGGAGAAAATCAAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAATTTGCAGCTGGAAGAGATCTTACACCTGATCAGCTAAACAACATGATAGAGATCTTATCTGACTGgtttgtatgcttatttaagaatttttctacatatagtaaatgtgcatgcttgcctaatacaacttttccacttctaaaaatgtgaatgcttgttttggta
- - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC