1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAGGAGAAAATCAAATGGGCTGACACAATGAGTGATGTGAACAAGAAGCACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctagattaaactgaagcatttgttaggaataaatttgcatctgcttgtgatgagttatgctctgttttcttcattttcctacttctgccttactg...
species | Zea mays |
transcript | GRMZM2G085670_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG GCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAKGAEST: gi|86473889|gb|DY240259.1|DY240259
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... atttaagcagGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG GCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGAEST: gi|211111836|gb|FL481581.1|FL481581
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... atttaagcagGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGCAGEST: gi|93013200|gb|EB638720.1|EB638720
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATT-A--AGgtgagctaga ... atttaagc
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAGGAGGCCAAAAAATCAATTAAG GCAGACATCGACATACGAGGGCAGGAGGACTACCTTTCTGAATCTGTAGGAEST: gi|60340650|gb|DN207623.1|DN207623
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... atttaagcagGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG GCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGAEST: gi|33092814|gb|CF052808.1|CF052808
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... atttaagcagGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGCAGEST: gi|71306428|gb|DR789361.1|DR789361
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATT-A--AGgtgagctaga ... atttaagc
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG GCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGAEST: gi|78024318|gb|DV492705.1|DV492705
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... atttaagcagGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG GCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGA
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... atttaagcagGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGGAGAAAATCAAATGGGCTGACACAATGAGTGATGTGAACAAGAAGCACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctagattaaactgaagcatttgttaggaataaatttgcatctgcttgtgatgagttatgctctgttttcttcattttcctacttctgccttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG