1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaaatatcgcaaagtaacttgtcagcgaatggttcagtatcgtatcttgttagtttcacttgtagtttgtgctcattgtgtaatgtcctgtggtgatgc...
species | Zea mays |
transcript | GRMZM2G085602_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTTCTTCAGAACAGGGTAEST: gi|211193237|gb|FL445828.1|FL445828
genomic: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaaatatcg ... ttctttgaagGCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTTCTTCAGAACAGGGTA
EST: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTCTTCTTCAGAACAGGGEST: gi|91874350|gb|EB404307.1|EB404307
genomic: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaaatatcg ... ttctttgaagGCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACT-T-CTTCAGAACAGGG
EST: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAG GCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTTCTTCAGAACAGGGTA
genomic: TCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaaatatcg ... ttctttgaagGCCTTTCTGAGCAAGTAAATGTGCAAATGGTCACTTCTTCAGAACAGGGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACATGCTAATCTTCCAGCATATTCATCGTTGGAGAGGGTGGTCCAGCAAGCGACTGTGGTTAGACAATACCTACAGCAGGAAGTTGGCAAGgtaaatatcgcaaagtaacttgtcagcgaatggttcagtatcgtatcttgttagtttcacttgtagtttgtgctcattgtgtaatgtcctgtggtgatgc
- - - - - - - - - - - - - - - - - - - - - - AGCAAG