1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CATGCTTAAGGATGGACTTTGGGATGTATACAATGACTGTGCCATGGGAATGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAGgtctctcactgtcttctgttataattttattcctatgtttgtcaaaacataggtggtagtttccagtagttggttaatattggcaattattcttttgaga...
species | Zea mays |
transcript | GRMZM2G085474_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAG GATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|78114650|gb|DV533038.1|DV533038
genomic: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAGgtctctcact ... ttgttcatagGATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAG GATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGAEST: gi|149076180|gb|EE164774.2|EE164774
genomic: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAGgtctctcact ... ttgttcatagGATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGA
EST: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAG GATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|211292809|gb|FL187023.1|FL187023
genomic: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAGgtctctcact ... ttgttcatagGATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAG GATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|149008746|gb|EE040943.2|EE040943
genomic: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAGgtctctcact ... ttgttcatagGATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGA-GACCAG GATGCTTTTGCEST: gi|148964641|gb|EC905928.2|EC905928
genomic: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAGgtctctcact ... ttgttcatagGATGCTTTTGC
EST: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAG GATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|149050402|gb|EE155650.2|EE155650
genomic: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAGgtctctcact ... ttgttcatagGATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAG GATGCTTTTGCTATCCAAAAGCA-CCAGCGTGGAATTGCTGCTCGTGACAGEST: gi|211385847|gb|FL095517.1|FL095517
genomic: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAGgtctctcact ... ttgttcatagGATGCTTTTGCTATCCAAA-GCAACCAGCGTGGAATTGCTGCTCGTGACAG
EST: GTGTGCCGAACTTTGTGCTGACNATCATGCCCTCACAAGAGAAGACCCAG -ATGCTTTTGCTATCCAAAGCAACCAGCGTGGGAATTGCTGCTCGTGACAEST: gi|71769365|gb|DR967302.1|DR967302
genomic: GTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACC-AGgtctctcact ... ttgttcatagGATGCTTTTGCTATCCAAAGCAACCAGCGTGG-AATTGCTGCTCGTGACA
EST: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAG GATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGACAGTEST: gi|32863231|gb|CF002913.1|CF002913
genomic: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAGgtctctcact ... ttgttcatagGATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGACAGT
EST: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAG GATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGA
genomic: TGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAGgtctctcact ... ttgttcatagGATGCTTTTGCTATCCAAAGCAACCAGCGTGGAATTGCTGCTCGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCTTAAGGATGGACTTTGGGATGTATACAATGACTGTGCCATGGGAATGTGTGCCGAACTTTGTGCTGACAATCATGCCCTCACAAGAGAAGACCAGgtctctcactgtcttctgttataattttattcctatgtttgtcaaaacataggtggtagtttccagtagttggttaatattggcaattattcttttgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacata