1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGCACTGAGCATATTGTCATGTCTTCTTCCTGAGGCGAAGTTATTTCCGCAGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttcttggacagtttctgcgctattatcttcaacttgatttgcacgaatgcaatgtaatatccagcgcatatcctattattgtgtgcatggtttg...
species | Zea mays |
transcript | GRMZM2G085438_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAAAGATATAGGAGATTTGGC--------ATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|110518313|gb|EE022900.1|EE022900
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: CAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|71759858|gb|DR957795.1|DR957795
genomic: CAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|78082085|gb|DV510497.1|DV510497
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: GAAAGATATAGGAGATTTGGCATTTTGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|88752776|gb|DY536917.1|DY536917
genomic: GAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTTTGACCAAATGAGATTAAGAACAGCAEST: gi|78123598|gb|DV541982.1|DV541982
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|78076592|gb|DV505026.1|DV505026
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|40333901|gb|CK367971.1|CK367971
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGC--------ATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|86468691|gb|DY235061.1|DY235061
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|71759897|gb|DR957834.1|DR957834
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCAEST: gi|31354329|gb|CD438686.1|CD438686
genomic: AAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
EST: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTA GCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
genomic: AGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttct ... tcattttcagGCTGAGTACAATGCCATCTCATATTCTGACCAAATGAGATTAAGAACAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCACTGAGCATATTGTCATGTCTTCTTCCTGAGGCGAAGTTATTTCCGCAGAAAGATATAGGAGATTTGGCATTTAGAGATCCAAGGAAAAGGAAAGTAgtaagtttcttggacagtttctgcgctattatcttcaacttgatttgcacgaatgcaatgtaatatccagcgcatatcctattattgtgtgcatggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA