Sequence
atgc intronic sequence ATGC exonic sequenceTGGTGTAAGACCATTTGGAGTATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaagaagttacaagatagaaacctcaaacctgtttatcaacctttcaaaaaaaaggaaacctgtttattgtctcacagggatcatcacaagta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 6
TGGTGTAAGACCATTTGGAGTATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaagaagttacaagatagaaacctcaaacctgtttatcaacctttcaaaa--aaaaggaaacctgtttattgtctcacagggatcatcacaagta--
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TGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat--agctgcgtgataggggctctt--ttttgttgcaactgtttcaaaattaatgtgtacgttgacccttgtctcaataataagctgcaaagtgtt
upper sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 7
TGGTGTAAGACCATTTGGAGTATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaagaagttacaagatagaaacctcaaacctgtttatcaacctttcaaaaaaaaggaaacctgttt--attgtctcacagggatcatca---caagta-
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TGGTGTAAGGCCCTTTGGAGTATCACTGTTGGTTGCTGGTTTTGATGACAATGGTCCACAATTGTACCAGgtactc-----aaattttaagtttgagttattaagcat-tttattaatatactatttaatgttcttcccttttcaaatgcatttaatggattggtgggttgggcaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211072805|gb|FL453477.1|FL453477EST: TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGTNNNN
genomic: TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGG-GAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTGTAAGACCATTTGGAGTATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaagaagttacaagatagaaacctcaaacctgtttatcaacctttcaaaaaaaaggaaacctgtttattgtctcacagggatcatcacaagta
- - - - - - - - - - - - GCTGTT