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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATTCCTATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGGGCATTCGAGgtctgaagcacatgagctctcttcttagtatacaggtcatggatgtgatttattgcagcatagtgttagtcctggagtctgaatggctgatgatctattttctcag

Basic information

species Zea mays
transcript GRMZM2G085000_T04
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40303424|gb|CK347811.1|CK347811
EST:     ATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGGGCATTCGAG                         GGATCTCCCTTCTGTAGATTAGTACGAGAGACGCTTGTTGAGTTGGAATTG
genomic: ATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGGGCATTCGAGgtctgaagca ... attttctcagGGATCTCCCTTCTGTAGATTAGTACGAGAGACGCTTGTTGAGTTGGAATTG
EST: gi|148937629|gb|EC881822.2|EC881822
EST:     ATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGGGCATTCGAG                         GGATCTCCCTTCTGTAGATTAGTACGAGAGACGCTTGTTGAGTTGGAATTG
genomic: ATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGGGCATTCGAGgtctgaagca ... attttctcagGGATCTCCCTTCTGTAGATTAGTACGAGAGACGCTTGTTGAGTTGGAATTG
EST: gi|60352714|gb|DN219687.1|DN219687
EST:     ATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGGGCATTCGAG                         GGATCTCCCTTCTGTAGATTAGTACGAGAGACGCTTGTTGAGTTGGAATTG
genomic: ATACTGCTTCAAGAATCCCACCGCAGCCTATAGAGATATGGGCATTCGAGgtctgaagca ... attttctcagGGATCTCCCTTCTGTAGATTAGTACGAGAGACGCTTGTTGAGTTGGAATTG