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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCGAGCCATTCTTCAATGCGGCTGCTTCCCAGTTTATCCTTGGACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgtatgtcttattccagattttgctttagttgtggtgctagctgtataaacttgtattttgtgatatgctgcaacattaacactacggtatcggtactcaa...

Basic information

species Zea mays
transcript GRMZM2G083344_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083344_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g15160.1 (Oryza sativa), 5'ss of exon 6
CTCTCGAGCCATTCTTCAATGCGGCTGCTTCCCAGTTTATCCTTGGACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgtatgtcttattccagattttgctttagttgtggtgctagctgtataa-acttgtattttgtgatatgctgcaacattaacactacggtatcggtactcaa------
|||| || ||||| ||||||||||||||||| |||||||||||||| || | |||||||||||| || ||| | ||||||| ||| || ||||| ||||  ||| |||     ||||||||     ||| | ||||| ||| |  |||||||| ||   ||       || |   ||| || |  |   |   |||       
CTCTTGAACCATTTTTCAATGCGGCTGCTTCACAGTTTATCCTTGGCCAGCAAGTTCCATTGACGCTGTGGTTATCTCTTGCTCCGGTTGTGATAGgta-atctcattatgccttttgctt-----gtgttcctagcagtacatcacttgtatcttaacatcaatgcaaataaggaca-tatgaaagtaggtttcatggttgt

upper sequence: GRMZM2G083344_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA13G24360.1 (Glycine max), 5'ss of exon 6
CTCTCGAGCCATTCTTCAATGCGGCTGCTTCCCAGTTTATCCTTGGACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgta-tgtcttattccagattttgctttagttgtggtgctagctgtataaacttgtattttgtgatatgctgcaacattaacactacggtatcggtactcaa-
|||| ||||||||||||||||| |||||||| ||||| || ||||| ||| || | ||  | ||  | |||||||| || | ||| || || |||||||   ||    |      ||   || || |  | | |    |||  |  |||| |     || || ||  ||   ||   |  ||  | |    | |    
CTCTTGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAATCAATCCCCATCACTTTGTGGCTGTCACTGGCTCCTGTTGTTATTGgtaacatccctcttgttcattcaattgagatacgattcct-ttgtccattcttgaaaaaaatgtta-gcaacacattttcaatcactctctttccaattggc

upper sequence: GRMZM2G083344_T03 (Zea mays), 5'ss of exon 6
lower sequence: AT5G46110.1 (Arabidopsis thaliana), 5'ss of exon 6
CTCTCGAGCCATTCTTCAATGCGGCTGCTTCCCAGTTTATCCTTGGACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgtatgt-cttattccagattttgctttagttgtggtgctagctgtataaacttgtattttgtgatatgctgcaacattaacactacggtatcggtactcaa
| || |||||||||||||||||||||||||| || || ||  | |||||| |  | ||  | ||||| ||| ||||||| | ||| || ||  ||||||    || | || |  | || |  |  || | |||      || ||      ||   | | | ||| ||||                            
CACTTGAGCCATTCTTCAATGCGGCTGCTTCTCAATTCATTATGGGACAATCCATCCCCATAACACTATGGTTGTCTCTAGCTCCTGTTGTTCTTGgtaaacactcaatcaaactctttccatgtttcttgtgtcctaagtttattggattaacctttaaaatgttgcag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71439302|gb|DR820352.1|DR820352
EST:     ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTG                         GTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGA
genomic: ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgtatgtctta ... aaatgatcagGTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGA
EST: gi|78087779|gb|DV516172.1|DV516172
EST:     ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTG                         GTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA
genomic: ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgtatgtctta ... aaatgatcagGTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA
EST: gi|148961156|gb|EE011865.2|EE011865
EST:     ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTG                         GTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA
genomic: ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgtatgtctta ... aaatgatcagGTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA
EST: gi|71768356|gb|DR966293.1|DR966293
EST:     ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGNTGATTG                         GTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA
genomic: ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgtatgtctta ... aaatgatcagGTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA
EST: gi|91055754|gb|EB166172.1|EB166172
EST:     ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTG                         GTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA
genomic: ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgtatgtctta ... aaatgatcagGTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA
EST: gi|76930051|gb|DV172256.1|DV172256
EST:     ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTG                         GTGTCTCGGTAGCATCCCTCACTGAACTCTCA
genomic: ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgtatgtctta ... aaatgatcagGTGTCTCGGTAGCATCCCTCACTGAACTCTCA
EST: gi|149095075|gb|EE180680.2|EE180680
EST:     ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTG                         GTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA
genomic: ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgtatgtctta ... aaatgatcagGTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA
EST: gi|148962629|gb|EE013519.2|EE013519
EST:     ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTG                         GTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA
genomic: ACAACCAGTTCCATTGACACTCTGGCTGTCTCTTGTTCCAGTGGTGATTGgtatgtctta ... aaatgatcagGTGTCTCGGTAGCATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCA