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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAACATTGCCTATGGGAAAGAAGATGCAACAGCTGAGGAGATAATGGCTGCAACAAAGCTTGCTAATGCAGCAAATTTCATCGATAAGTTACCATATgtatgtagattaaacaaaattgtttcatacttgtgcaaagttacatatatgttataactaaccataattaatcgagaactttgttatttcag

Basic information

species Zea mays
transcript GRMZM2G082385_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082385_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g47490.1 (Oryza sativa), 5'ss of exon 7
GGAGAACATTGCCTATGGGAAAGAAGATGCAACAGCTGAGGAGATAATGGCTGCAACAAAGCTTGCTAATGCAGCAAATTTCATCGATAAGTTACCATATgtatgtagattaaacaaaattgtttcatacttgtgcaaagttacatatatgttataact----aacca--taattaatcgagaactttgttatttcag
 |||||||||| ||| || | ||||||||||||  ||||||||||||||||||||||| |||||||||||||||| || ||||| || ||  ||||  ||||||| |    | ||| || || |||| || ||||| |  ||       | || | | |    ||| |  ||| ||| |      | |||| | ||||
AGAGAACATTGTCTACGGAAGAGAAGATGCAACGACTGAGGAGATAATGGCTGCAACAGAGCTTGCTAATGCAGCGAAGTTCATTGAGAATCTACCTAATgtatgaaag--acacagaaatgcttca-acctgtgcgatttttttatcgtattgttatttgacaactaactaactaaccatctcttctgttttctcag

upper sequence: GRMZM2G082385_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA13G29380.1 (Glycine max), 5'ss of exon 6
GGAGAACATTGCCTATGGGAAAGAAGATGCAACAGCTGAGGAGATAATGGCTGCAACAAAGCTTGCTAATGCAGCAAATTTCATCGATAAGTTACCATATgtatg---------ta---gattaaacaaaattgtttcatacttgtgcaaagttacatatatgttataactaaccataattaatcgagaactttgttatttcag------
 |||||||| || || |||||||||| |||||||| |||||||||||   | |||| ||  |||||||||||   ||| ||||| |||||| | ||  | |||||         ||    | | ||| |||     |  ||  | |       |   | |   |||  | ||     | |||||  | || | | |||||          
AGAGAACATAGCATACGGGAAAGAAGGTGCAACAGATGAGGAGATAACAACAGCAATAACACTTGCTAATGCCAAAAAGTTCATTGATAAGCTGCCTCAGgtatgacattcttttacacaactgaaccaaaccaagttttatgtttctctctcttttttttctttaagattatttgaagttaat--aaaattgtattattctgtttgtag