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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATACCAAGCATTGACTTTGTTCCTCGTCGGCCCATTCCTTGATGGGTTTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTGgtaagcattgttaatccaggcttcggggggagcttatgttttagctgtcgatagtactttcatttcatctgatcacgggtctacacttactgtctctgcatgcag

Basic information

species Zea mays
transcript GRMZM2G081848_T05
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081848_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g07310.3 (Oryza sativa), 5'ss of exon 5
CCCATACCAAGCATTGACTTTGTTCCTCGTCGGCCCATTCCTTGATGGGTTTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTGgtaagcattgttaatccaggcttcggggggagcttatgttttagctgtcgatagtactttcatttcatctgatcacgggtctacacttactgtctctgcatgcag
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CCCATACCAAGCATTGACCTTGTTCATCGTCGGCCCTTTCCTTGATGGGTTTTTGACTAACCAAAATGTCTTTGCTTTTGATTACACATCTCAAGTTGTGgtaagcagt---aaactgagttttggaga---cttatgtt---------gaacgtagctgtgcttcatctgact-cggttct----ttacggtatctgcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149097658|gb|EE183555.2|EE183555
EST:     ACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTG                         TTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
genomic: ACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTGgtaagcattg ... ctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
EST: gi|31358400|gb|CD442757.1|CD442757
EST:     TTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTG                         TTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
genomic: TTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTGgtaagcattg ... ctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
EST: gi|149105553|gb|EE291087.2|EE291087
EST:     ACTCAAGTCCTG                         TTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
genomic: ACTCAAGTCCTGgtaagcattg ... ctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
EST: gi|149102836|gb|EE288178.2|EE288178
EST:     TTTGGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTG                         TTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
genomic: TTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTGgtaagcattg ... ctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
EST: gi|32842786|gb|CD982467.1|CD982467
EST:     TTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTG                         TTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT
genomic: TTTTGACTAACCAAAACGTCTTTGCTTTCGACTACACAACTCAAGTCCTGgtaagcattg ... ctgcatgcagTTCTTCATCGTGCTGTCGTGCCTGATCTCGGTCTCGGTAAACTTCAGCACT