Sequence
atgc intronic sequence ATGC exonic sequenceGAGGAAAGAAGGTTGTCGTTGCCAAAGTATCAGGTGCATGATGAAACTAGCCAGgtaagttgtgtttcttatgatactattattgtagtttctcaaacaaaaggtttatcgctcaatctgcagttcagcaatgagcaatagcgatatgttattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G081812_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g38790.3 (Oryza sativa), 5'ss of exon 6
GAGGAAAGAAGGTTGTCGTTGCCAAAGTATCAGGTGCATGATGAAACTAGCCAGgtaagttgtgtttcttatgatactattattgtagtttctcaaacaaaaggtttatcgctcaatctgcagttca--gcaatgagcaatagcgatatgttattt
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GAGGAAAGAAGATTGTCGCTACCCAAGTATCAGGTGCATGATGAAACTAGCCAGgtaagttctgatttttataattttatatctgtaatattaatgatatgtgaaaaa--aaccaagttgaagttcatggggatgctctgaactggaatattgtgt
upper sequence: GRMZM2G081812_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA05G34280.1 (Glycine max), 5'ss of exon 6
GAGGAAAGAAGGTTGTCGTTGCCAAAGTATCAGGTGCATGATGAAACTAGCCAGgtaagttgtgtttcttatgatactattattgtagtttct----caaacaaaaggtttatcgctcaatctgcagttcagcaatgagcaatagcgatatgttattt
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GAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGgtaagtcatactacctctttaatagatggagttgcttttgcatctaaccagatgagtaggctttatgcttcctgttttcagattccgttgtttacacatt----
upper sequence: GRMZM2G081812_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA08G05390.2 (Glycine max), 5'ss of exon 6
GAGGAAAGAAGGTTGTCGTTGCCAAAGTATCAGGTGCATGATGAAACTAGCCAGgtaagttgtgtttcttatgatactattattgtag-tttctcaaacaaaaggtttatcgctcaatctgcagttcagcaatgagcaatagcgatatgttattt-
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GAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGgtaagtcatactacctctttaatagatggagttgctttcacatctaaccagatgagtataggctttatgcttc--ctgttttcagattcagttgtttacaca
upper sequence: GRMZM2G081812_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv03s0017g02160.t01 (Vitis vinifera), 5'ss of exon 6
GAGGAAAGAAGGTTGTCGTTGCCAAAGTATCAGGTGCATGATGAAACTAGCCAGgtaagttgtgttt--cttatgatactattattgtagtttctcaaacaaaaggtttatcgctcaatctgcagttcagcaatgagcaatagcgatatgttattt---
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GAGGAAAGAAGGATGTCATTACTGAAGTATCAGGTGCATGATGAAACTAGCCAGgtaagttatgactgccttgtaatcttattcatacaactaggtatacgttgtattaaat-tttgatcttc--taaaaacatgtgcagaatt--tttgttctttcat
upper sequence: GRMZM2G081812_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv01s0011g01240.t01 (Vitis vinifera), 5'ss of exon 6
GAGGAAAGAAGGTTGTCGTTGCCAAAGTATCAGGTGCATGATGAAACTAGCCAGgtaagttgtgtttcttatgatactattattgtagtttctcaaacaaaaggtttatc---gctcaatctgcag-ttcagcaatgagcaatagcgatatgttattt
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GAGGAAAGAAGAATGTCATTAATGAAGTACCAGGTGCATGATGAAACTAGCCAGgtaagttataactacttctgtaatataatt-cattcaactggatatggagttgcttccaaccagatgggtaggctttatattttgtatttttcatattcaa---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60394945|gb|DN227814.1|DN227814EST: AAAGAAGGTTGTCGTTGCCAAAGTATCAGGTGCATGATGAAACTAGCCAG CAAAACTAGGTGGCTGAGGTTCTGCCAATACGGTAGCATTTATTGTAGCTT
genomic: AAAGAAGGTTGTCGTTGCCAAAGTATCAGGTGCATGATGAAACTAGCCAGgtaagttgtg ... gggtttgtagCAAAACTAGGTGGCTGAGGTTCTGCCAATACGGTAGCATTTATTGTAGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGAAAGAAGGTTGTCGTTGCCAAAGTATCAGGTGCATGATGAAACTAGCCAGgtaagttgtgtttcttatgatactattattgtagtttctcaaacaaaaggtttatcgctcaatctgcagttcagcaatgagcaatagcgatatgttattt
- - AAAGAA
- - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaaa