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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTATCTCCTGAAAAGATTCTACTAAGGTGGATGAACTTTCAACTGAAGAAAGCAGGTTTCCAGAAAAGAGTAACAAATTTTTCATCAGATATAAAAgtatgcacatttcattcccatttcagtcctccccttttagttattgtaaaaaaatacaattggcttggttaatataattgtagtcattgtagttaaccag...

Basic information

species Zea mays
transcript GRMZM2G081380_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081380_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g33080.1 (Oryza sativa), 5'ss of exon 6
GAGTTTATCTCCTGAAAAGATTCTACTAAGGTGGATGAACTTTCAACTGAAGAAAGCAGGTTTCCAGAAAAGAGTAACAAATTTTTCATCAGATATAAAAgtatgcacatttcattccca-tttcagtcctccccttttagttattgtaaaaaaatacaattggcttggttaata-taattgta-gtcattgtagttaaccag
||| |||||||||||||| ||  |||| || ||||||||||||||| ||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||| || || ||| ||| | | |  |   |   ||||||| |||  |      |||  |    |   |  ||  | |   | | ||   |||||  |   
GAGCTTATCTCCTGAAAAAATATTACTCAGATGGATGAACTTTCAATTGAAGAAAGGAGGTTTCCAAAGAACAGTAACAAATTTTTCATCAGATATAAAAgtatgctcacttgatttccaatatgaaccagtcttctttagttgttgctagctgtgacatcttttctacatgttagcattcacatgccacgatagttttc---

upper sequence: GRMZM2G081380_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv00s1365g00010.t01 (Vitis vinifera), 5'ss of exon 5
GAGTTTATCTCCTGAAAAGATTCTACTAAGGTGGATGAACTTTCAACTGAAGAAAGCAGGTTTCCAGAAAAGAGTAACAAATTTTTCATCAGATATAAAAgtatgcacatttcattcccatttcagtcctccccttttagttattgtaaaaa-aatacaattggcttggttaatataattgtagtcattgtagttaaccag---
|||| || | || || |||||  ||||  |||||||||| |||||||||||||||||||| |   ||| || ||| ||||| || ||  | ||| | || |||   | ||   |||    ||| |||  |     |||  || || |      |||    || |||||  ||      || |  |   |||| || |  |    
GAGTCTACCACCAGAGAAGATCTTACTTCGGTGGATGAATTTTCAACTGAAGAAAGCAGGATATAAGAGAATAGTTACAAACTTCTCTACTGATGTGAAGgtaa--aaatgaaattaagttttaagtgtttttaattttttttttctgtggttaatttgttttgcttg--tatctgccttctctttcatgtattttataaacct