1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTACGGTTGGACAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaataaatacagagacaacatacttctgactctgattttgcttcctataagaattgatggcattcgttgagcatttggggacatgatcccccatcctcacttgatcttacttgcattctcacttgattttacttgcttccctgaacctgtgcag
species | Zea mays |
transcript | GRMZM2G076826_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|211509914|gb|FL437411.1|FL437411
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|17931727|gb|BM268687.1|BM268687
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|18165025|gb|BM334870.1|BM334870
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|71441162|gb|DR822212.1|DR822212
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCCCCAACAG CTGCTTTGATGTTTTCAATTTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|91052588|gb|EB163006.1|EB163006
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCCCCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|18174937|gb|BM350325.1|BM350325
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|211192317|gb|FL065114.1|FL065114
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCCEST: gi|18169711|gb|BM339551.1|BM339551
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|71434664|gb|DR815714.1|DR815714
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|211194714|gb|FL065125.1|FL065125
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGA-CAAGGACGAGGATGGGTTCMEST: gi|211192306|gb|FL065103.1|FL065103
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGSTCTGATGTCTTCAATCTATGAAGARAACAAGGACGAGGATGGGTTCCEST: gi|16918829|gb|BM073915.1|BM073915
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|16926343|gb|BM079411.1|BM079411
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|91052589|gb|EB163007.1|EB163007
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|6194643|gb|AW146747.1|AW146747
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAAGATGGGTTCCEST: gi|93016973|gb|EB642493.1|EB642493
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCCCCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCCEST: gi|211194707|gb|FL065118.1|FL065118
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGACGAGGATGGGTTCCEST: gi|17930090|gb|BM267050.1|BM267050
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
EST: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAG CTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
genomic: TGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaa ... acctgtgcagCTGCTCTGATGTCTTCAATCTATGAAGAGAACAAGGATGAGGATGGATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTACGGTTGGACAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAAGCTATCTTCATCTTTGTGAAGAACACCCTTCCACCAACAGgtctggaaaataaatacagagacaacatacttctgactctgattttgcttcctataagaattgatggcattcgttgagcatttggggacatgatcccccatcctcacttgatcttacttgcattctcacttgattttacttgcttccctgaacctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC