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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGCCAGATGGTTATGTTCAGTGCAACATGGCCTCTTGCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAGgttgtgctgtttttgtctgttttttttttgctttcaaacaagtacctaggctgacagtcttttcaatgtctcactgcag

Basic information

species Zea mays
transcript GRMZM2G076484_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G076484_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g20580.1 (Oryza sativa), 5'ss of exon 6
TACGCCAGATGGTTATGTTCAGTGCAACATGGCCTCTTGCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAGgttgtgctgtttttgtctgttttttttttgctttcaaacaagtacctaggc--tgacagtcttttcaatgtctcactgcag----------
|||| |||| ||||||||||||||| |||||||||| |||||||||| |  ||||||| |||||||||||||||||||| ||||||||   | |  | || |||  | | || ||  | ||  |    ||    ||   ||     |||    ||||   |   ||           
TACGTCAGACGGTTATGTTCAGTGCTACATGGCCTCCTGCTGTCCACCAGCTAGCCCAAGAGTTTATGGATCCAAATCCAATAAAGgtatagtttctcttttcttatctcttgttaatatctgattgctaatgcggtaatgctgaccttccgtatgtggtatgccaccttgttgtag

upper sequence: GRMZM2G076484_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT1G31970.1 (Arabidopsis thaliana), 5'ss of exon 6
TACGCCAGATGGTTATGTTCAGTGCAACATGGCCTCTTGCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAGgttgtgctgtttttgtctgttttttttttgctttcaaacaagtacctagg----ctgacagtcttttcaatgtctcactgcag
| || || |||||||||||||||||||| |||||| | | ||| |||||||| |||||||| || |||||||||||||| || |||||  || | |  |  || |||| | |||      |    |  | | ||      | ||   || ||  ||| |||  | |   
TTCGTCAAATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCCCAGGAATTCATGGATCCAAATCCAATCAAGgtc-tgttttcctcctcagtttgtctttcctcacctgcaagttgcttaaaatttccgatgatcattcaaatttctttcag---

upper sequence: GRMZM2G076484_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv02s0109g00380.t01 (Vitis vinifera), 5'ss of exon 8
TACGCCAGATGGTTATGTTCAGTGCAACATGGCCTCTTGCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAGgttgtgctgtttttgtctgttttttttttgctttcaaacaagtacctaggctgacagtcttttcaatg--tctcactgcag
  ||||| ||||| ||||| |||||||||||||||||  |||| ||  ||||||| || || ||||||||||| || ||  | ||||| |||   | |||||   |   ||  |  | || |||||  |  ||| |            | ||||    |   | |||
CTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAATTAGCTCAAGAATTTATGGATCCCAACCCAGTTAAGgt-gtgtgatatttgtaattgagttaatgacctttaaacagttctctatgtccttttgaaaattaatgagctttctttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32849255|gb|CD988936.1|CD988936
EST:     TTGCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAG                         GTTGTTATTGGATCAGAAGACCTTGCTGCTAACCATGACGTGATGCAAATT
genomic: TTGCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAGgttgtgctgt ... ctcactgcagGTTGTTATTGGATCAGAAGACCTTGCTGCTAACCATGACGTGATGCAAATT
EST: gi|32849273|gb|CD988954.1|CD988954
EST:     TTTCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAG                         GTTGTTATTGGATCAGAAGACCTTGCTGCTAACCATGACGTGATGCAAATT
genomic: TTGCTGTCCACAAATTAGCCCAGGAGTTTATGGATCCAAATCCGATAAAGgttgtgctgt ... ctcactgcagGTTGTTATTGGATCAGAAGACCTTGCTGCTAACCATGACGTGATGCAAATT