1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTCTTGGCGTTCATTTCCGGGCTCCTCAAAGCCTACGGACACAGGCATCCTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgatattttttcattaataagatgcttaagaaaaattgcagaacccttttcctccagtaatgtttcttttacctattattattattaacattgtatggagcaatgtag
species | Zea mays |
transcript | GRMZM2G076392_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAG GTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTCEST: gi|37374722|gb|CF623746.1|CF623746
genomic: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgata ... agcaatgtagGTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTC
EST: CTTTCATCAAGCAATCCTACCAGATAGTCTGGCTGTTCTTTCAGAAGAAG GTGCTCTGGAGGAGGATGTTTTGAACAGTCTTGAAGGACTGGTTTTGGTTCEST: gi|78545150|gb|DV622648.1|DV622648
genomic: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgata ... agcaatgtagGTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTC
EST: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAG GTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTCEST: gi|211161533|gb|FL067460.1|FL067460
genomic: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgata ... agcaatgtagGTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTC
EST: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAG GTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTCEST: gi|24763801|gb|CA398972.1|CA398972
genomic: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgata ... agcaatgtagGTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTC
EST: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAG GTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTCEST: gi|6012610|gb|AW062047.1|AW062047
genomic: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgata ... agcaatgtagGTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTC
EST: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAG GTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTCEST: gi|83278673|gb|DV942681.1|DV942681
genomic: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgata ... agcaatgtagGTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTC
EST: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAG GTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTCEST: gi|16925439|gb|BM078507.1|BM078507
genomic: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgata ... agcaatgtagGTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTC
EST: CCAGATAGGCTGGCTGTTCTTTCAGAAGAAG GTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTCEST: gi|78545097|gb|DV622595.1|DV622595
genomic: CCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgata ... agcaatgtagGTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTC
EST: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAG GTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTCEST: gi|37374724|gb|CF623747.1|CF623747
genomic: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgata ... agcaatgtagGTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTC
EST: CTTTCATCAAGCAATCTTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAG GTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTC
genomic: CTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgata ... agcaatgtagGTGCTCTGGAGGAGGATGTTTTGAACAGTCCTGAAGGACTGGTTTTGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTTGGCGTTCATTTCCGGGCTCCTCAAAGCCTACGGACACAGGCATCCTTTCATCAAGCAATCCTACCAGATAGGCTGGCTGTTCTTTCAGAAGAAGgtacttgatattttttcattaataagatgcttaagaaaaattgcagaacccttttcctccagtaatgtttcttttacctattattattattaacattgtatggagcaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG