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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTCTGCGCAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAGgtaaacacatggttgtagttactgctgtcgtttgaaaggatttcaattagtttcattcatacagttacagtagcaagtgccctggttatgcaattttagttgtcagtgaaatatctgtttctgaaagcacttgccattcctttttaatatcag

Basic information

species Zea mays
transcript GRMZM2G075485_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G075485_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 5'ss of exon 6
GCTTTTCTGCGCAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAGgtaaa----cacatg--gttgtagt-tactgctgtcgtttga----aaggatttcaattagtttcattcatacagtta--cagtagcaa-gtgcc---ctggttatgcaattttagtt--gtcagtgaaa--tatctgtttctgaaagcacttgccattcctttttaatat-cag
|||||| ||  |||||||||||||||| |||||||||||||| || ||||| || ||||||||||| ||||| |||| ||||||||||     | |||  ||||   | || |  | || | | |     |  |  |   |   || | ||  |||| | |  |  | |||| |||     ||  | |||| |  | | |    ||  |||||  | |||  |  | |||   ||| ||||| | ||    | |  ||
GCTTTTTTGTTCAATGATTTGCTCAGATCCAAAGCTTGATTCCCATCGCTTTAAAGATATAATTGATGAGGCAATTGCTGAAGgtaaatgattatatgctgttgccatataattttatcatataatattgaatacctttttctattccttttctacaatgaagcgctggcaaagtgtttagcttatcatgctaactcaatctattccctgaaacttctctaatggttaaactcctttccatttccttcccttttgtag

upper sequence: GRMZM2G075485_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT3G12170.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTTTTCTGCGCAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAGgtaaacacatggttgtagttactgctgtcgtttgaaaggatttcaattagtttcattcatacagttacagtagcaagtgccctggttatgcaattttagttgtcagtgaaatatctgtttctgaaagcacttgccattcctttttaatatcag
|||||||||| ||||| |||||||  | || ||||||||||| ||||| ||||| ||||| || || ||||| ||||  |  ||||  |   |  || | |  |    | |  | |  |   |    |   || |||  | ||    ||       | | ||       | ||||                                                             
GCTTTTCTGCTCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAGGCCATTGCAGCGGgtaggcttctctttcttgcaataattcttttgtctataaaacctatccaggttc--tgatttgtttgtgcataccattgtttaacatctgcag------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78117499|gb|DV535886.1|DV535886
EST:     GCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAG                         GTGAGCTGAAGTCAACTAAGGTGTATGAGAAATGGGCTAAAAAGATCTCAG
genomic: GCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAGgtaaacacat ... ttaatatcagGTGAGCTGAAGTCAACTAAGGTGTATGAGAAATGGGCTAAAAAGATCTCAG
EST: gi|71443603|gb|DR824653.1|DR824653
EST:     GCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAG                         GTGAGCTGAAGTCAACTAAGGTGTATGAGAAATGGGCTAAAAAGATCTCAG
genomic: GCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAGgtaaacacat ... ttaatatcagGTGAGCTGAAGTCAACTAAGGTGTATGAGAAATGGGCTAAAAAGATCTCAG
EST: gi|91870824|gb|EB401103.1|EB401103
EST:     GCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAG                         GTGAGCTGAAGTCAACTAAGGTGTATGAGAAATGGGCTAAAAAGATCTCAG
genomic: GCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAGgtaaacacat ... ttaatatcagGTGAGCTGAAGTCAACTAAGGTGTATGAGAAATGGGCTAAAAAGATCTCAG
EST: gi|32909541|gb|CF014353.1|CF014353
EST:     GCTTGATTCTCACCGCTTCAAGGATATAATTGATGAGGCGATTGGTGAAG                         GTGAGCTGAAGT
genomic: GCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAGgtaaacacat ... ttaatatcagGTGAGCTGAAGT
EST: gi|71443604|gb|DR824654.1|DR824654
EST:     GCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAG                         GTGAGCTGAAGTCAACTAAGGTGTATGAGAAATGGGCTAAAAAGATCTCAG
genomic: GCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAGgtaaacacat ... ttaatatcagGTGAGCTGAAGTCAACTAAGGTGTATGAGAAATGGGCTAAAAAGATCTCAG
EST: gi|60341956|gb|DN208929.1|DN208929
EST:     GCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAG                         GTGAGCTGAAGTCAACTAAGGTGTATGAGAAATGGGCTAAAAAGATCTCAG
genomic: GCTTGATTCTCACCGCTTCAAGGATATAATTGACGAGGCGATTGGTGAAGgtaaacacat ... ttaatatcagGTGAGCTGAAGTCAACTAAGGTGTATGAGAAATGGGCTAAAAAGATCTCAG