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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGGAATACTTGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactaccttatgcagcaattcctgttttccccatatcttttttatatacactggataggtatccttagcatattttctgttgctgattattaattttaagtgctgaacaattctatactaaaggtgatttaaattgtcataatatag

Basic information

species Zea mays
transcript GRMZM2G075101_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G075101_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g64920.1 (Oryza sativa), 5'ss of exon 7
TAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGGAATACTTGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactaccttatgcagcaattcctgttttc--ccca------tatcttttttatatacact-ggataggtatccttagcata------ttttctgttgctgattattaattttaagtgctgaacaattctatactaaaggtgatttaaat-tgtcataatatag
|||||| |||||||||||||| ||||||||||| ||  |||||||| | |||||||| ||  | ||||| || ||||||||||| |  || || |||||||||| || ||||||||    || || |||||  ||||       ||  || |  | |||  |  ||||  |||  ||  |||       ||||||| |   | ||   |  |||| ||| |    | || ||      || ||||  || |   |   | | |||
TAATCCGAATGAAGACTATGCCGAGACAGAGTTAAAACTGAGGGAACATTTGCAATCGTTCCTAGAAACAGTAAAATCCTTCAATATGATCTACACTAAGgtgaatatcttatgcaatggtttcttttttcttcccaatttcccatacttctgctgtacgttcagataaatatttttgacatgatatctttttctgctaacggttgccatctttatgtgttttg-agttttacttgttagatgatagaattgcttttcattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93012884|gb|EB638404.1|EB638404
EST:     TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACCCAATATATATTAAG                         GAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
EST: gi|37398489|gb|CF636559.1|CF636559
EST:     TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAG                         GAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
EST: gi|74246322|gb|DT654236.1|DT654236
EST:     TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAG                         GAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
EST: gi|71761514|gb|DR959451.1|DR959451
EST:     TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAG                         GAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
EST: gi|32942644|gb|CF047463.1|CF047463
EST:     GTTAAATCCTTCAACACAATATATACTAAG                         GAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: GTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
EST: gi|6601609|gb|AW256155.1|AW256155
EST:     TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACCCAATATATACTAAG                         GAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
EST: gi|71773508|gb|DR971408.1|DR971408
EST:     TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAG                         GAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
EST: gi|76020456|gb|DT947626.1|DT947626
EST:     TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAG                         GAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
EST: gi|37388177|gb|CF631295.1|CF631295
EST:     TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAG                         GAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
EST: gi|31364678|gb|CD449033.1|CD449033
EST:     TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAG                         GAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
EST: gi|89250411|gb|DY622197.1|DY622197
EST:     TGCAATCATTTTTGGAAACGGTTAAATCCTTCACCACAATATATACTAAG                         GAAATCCATCCTTGGACCCCCATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: TGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
EST: gi|32942426|gb|CF047245.1|CF047245
EST:     GTTAAATCCTTCAACACAATATATACTAAG                         GAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC
genomic: GTTAAATCCTTCAACACAATATATACTAAGgtgactacct ... cataatatagGAAATCCATCCTTGGACCCACATGATGGAAGTGCCACAATTGCATGGCTTC