Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgcatttgctcattgccaaaatattgcgcctgtttctcttttatatatatctaccctgttgatccacaaacatgcaaaatatgcag

Basic information

species Zea mays
transcript GRMZM2G074386_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074386_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 5'ss of exon 6
GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgcatttgctcattgccaaaatattgc-----gcctgtttctcttttatatatat-ctaccctgttgatccac-aaacatgcaaaatatgcag
||||| |||||||| ||||||||| |||||||  ||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||| | | ||    |||| | |   |||             |||||| |       ||| | | ||  |  |||  | | || ||||||||   |||||
GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATGTGTTTGCATCGGCAACTGAGAGGGACATCTACACTgtatgtttcaccatctcagtactgcaatcccatcagtaatgtgtttcacaccgtcgtatttgccactttactgacgctcgaagcatgcaaatattgcag

upper sequence: GRMZM2G074386_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA08G39420.2 (Glycine max), 5'ss of exon 4
GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgcatttgctcattgccaaaatattgcgcctgtttctcttttatatatatctaccctgttgat-ccacaaacatgcaaaatatgcag
|||||||| || |||||||| ||  |||| ||  | ||||| || ||   ||| ||||||||||||||||||||||| || ||||| ||||| |   | |||| | | |  || ||         | |    |  |  | || |||  || | |||      ||||              
GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtt---tgtgctaaatacataattaccatttgattgtaggatgaacgtgtaactaaactatggatgtttttaacag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76013087|gb|DT940257.1|DT940257
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|71428371|gb|DR809421.1|DR809421
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|149016788|gb|EE154282.2|EE154282
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|84980373|gb|DW530722.1|DW530722
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|45847129|gb|CN071072.1|CN071072
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|74240044|gb|DT647958.1|DT647958
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|78109497|gb|DV527913.1|DV527913
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|71428372|gb|DR809422.1|DR809422
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|31362426|gb|CD446783.1|CD446783
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|32938641|gb|CF043460.1|CF043460
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|67017942|gb|CO446691.1|CO446691
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|71764181|gb|DR962118.1|DR962118
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|60395024|gb|DN227893.1|DN227893
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|149088717|gb|EE177839.2|EE177839
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|60343469|gb|DN210442.1|DN210442
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|78106986|gb|DV525404.1|DV525404
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|17930931|gb|BM267891.1|BM267891
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|32938447|gb|CF043266.1|CF043266
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|31364563|gb|CD448918.1|CD448918
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|7135769|gb|AW498256.1|AW498256
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGNCAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|148990363|gb|EE031928.2|EE031928
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|51592732|gb|CV071878.1|CV071878
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGGACTAAGCGCGA
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGG-ACTAAGCGCGA
EST: gi|74239718|gb|DT647632.1|DT647632
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|211298174|gb|FL244486.1|FL244486
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTTGGAAATTGTAGTCNATCA-CAANGTCNGGACTAAGCGTC
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTT-GGAAATTGTAGTC-ATCAACAAAGTCGGGACTAAGCG-C
EST: gi|12968327|gb|BG265273.1|BG265273
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|113689738|gb|DW847475.1|DW847475
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATC
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATC
EST: gi|149016857|gb|EE045623.2|EE045623
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|40302852|gb|CK347239.1|CK347239
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACTCT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|24769350|gb|CA404479.1|CA404479
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|74239719|gb|DT647633.1|DT647633
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|148940377|gb|EC885169.2|EC885169
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACAC-                         G-AGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|67026681|gb|CO455430.1|CO455430
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAA-TTGTAGTCATNCA-CAAAGTCGGGACTAAGCGCGA
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCAT-CAACAAAGTCGGGACTAAGCGCGA
EST: gi|78106987|gb|DV525405.1|DV525405
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|149111500|gb|EE295003.2|EE295003
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|32847010|gb|CD986691.1|CD986691
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|93012063|gb|EB637583.1|EB637583
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|16926492|gb|BM079560.1|BM079560
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|60352481|gb|DN219454.1|DN219454
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|61118932|gb|DN559893.1|DN559893
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCCACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|31354544|gb|CD438901.1|CD438901
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|14717546|gb|BI245196.1|BI245196
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|14243859|gb|BG841581.2|BG841581
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|78075596|gb|DV504030.1|DV504030
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|31361696|gb|CD446053.1|CD446053
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|17932205|gb|BM269165.1|BM269165
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|60337848|gb|DN204821.1|DN204821
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTG
EST: gi|74240043|gb|DT647957.1|DT647957
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|148940984|gb|EC885835.2|EC885835
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACAC-                         G-AGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|60340468|gb|DN207441.1|DN207441
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|78109496|gb|DV527912.1|DV527912
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
EST: gi|14243256|gb|BG840908.2|BG840908
EST:     ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACT                         GGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG
genomic: ATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgca ... aaatatgcagGGAGACAAGTTGGAAATTGTAGTCATCAACAAAGTCGGGACTAAGCGCGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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GATGCTGTCACACCATTGTCGGAGTCAGAGGCCATCGATCTAGTTAAGGATGTGTTTGCATCTGCAACTGAGAGAGACATCTACACTgtaagctgcatttgctcattgccaaaatattgcgcctgtttctcttttatatatatctaccctgttgatccacaaacatgcaaaatatgcag

- - - - - - - - - - - - - - - - - - - - - - - AGGATG