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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCGGTGTCTGCTTTCAATCATATTCTTAGTGATTTCTCTCTCATTGTTTTCCAATTTCAGTCAATTAGTGCATTCTCAGCAGTCATCGATCGTCTAGgtgacttctcccctccctccctccctccctcccttcctcccttcctgcctccatcccccctccgttaacgtggttaactgtaaattctttgtaatatag

Basic information

species Zea mays
transcript GRMZM2G074103_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074103_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g11946.1 (Oryza sativa), 5'ss of exon 6
CAATCGGTGTCTGCTTTCAATCATATTCTTAGTGATTTCTCTCTCATTGTTTTCCAATTTCAGTCAATTAGTGCATTCTCAGCAGTCATCGATCGTCTAGgtgacttctcccctccctccctccctccctcccttcctcccttcctgcctccatcccccctccgttaacgtggttaactgtaaattctttgtaatatag
||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || || || ||||||||||||||       |||   || ||| |  | |  ||| ||  | |       | || |    |     |   |  | |                       
CAATCAGTGTCTGCTTTCAATCATATCCTTAGTGATTTTTCTCTCATTGTGTTCCAGTTTCAGTCAATTAGTGCATTCTCGGCGGTTATTGATCGTCTAGgtgatg-----cctttttctctctcagcattgcttgctaacatatctagactattctaattgaacaataatcttcag----------------------

upper sequence: GRMZM2G074103_T04 (Zea mays), 5'ss of exon 6
lower sequence: Vv19s0085g01190.t01 (Vitis vinifera), 5'ss of exon 6
CAATCGGTGTCTGCTTTCAATCATATTCTTAGTGATTTCTCTCTCATTGTTTTCCAATTTCAGTCAATTAGTGCATTCTCAGCAGTCATCGATCGTCTAGgtgacttctcccctccctccctccctccctcccttcctcccttcctgcctccatcccccctccgttaacgtggttaactg-taaattctttgtaatatag--
|| || || |||||||||||||| || ||| ||||||| || |||||||| | ||| |||||| | || ||||| |||||||| ||||| ||||| || |||   ||      | |||   || |   |    ||  |       |  |   ||   |        |   ||||||  |  | || |   |   |  |    
CAGTCTGTATCTGCTTTCAATCACATCCTTGGTGATTTTTCCCTCATTGTATACCAGTTTCAGGCGATAAGTGCCTTCTCAGCTGTCATTGATCGACTTGgta--tttggtttttcctttatctcctgcatgttttgtttgaatttaaccaaataaacttgaaaggagattggttagttccttaacttgctactaagtgaac