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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATACTGAATTATGAGAAGGCTGTCCAGCTTAATTGGAATAGCCCACAGgttagcattaaatcattattttatcttgagttcttgagtgcagattatattataaaacgaaaatataaaaggctccgatctgagttaatggacgatcaat...

Basic information

species Zea mays
transcript GRMZM2G073934_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073934_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os10g37430.1 (Oryza sativa), 5'ss of exon 6
GCAATACTGAATTATGAGAAGGCTGTCCAGCTTAATTGGAATAGCCCACAGgttagcat-taaatcattatt--ttatcttgagttcttgagtgcagattatattataaaacgaaaatataaaaggctccgatctgagttaatggacgatcaat
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GCAATACTGAATTATGAGAAGGCTGTCCAGCTAAATTGGAATAGTCCGCAGgtcagaacctagatcctttttccttatcttcaggactttacaacataagaaaaaaaaaga-gaagatatgaaatgtttgcctttttgtgaa-gaagaaacat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149070025|gb|EE158426.2|EE158426
EST:     AATACTGAATTATGAGAAGGCTGTCCAGCTTAATTTGGA-TAGCCCACAG                         GCTCTCAATAACTGGGG
genomic: AATACTGAATTATGAGAAGGCTGTCCAGCTTAATT-GGAATAGCCCACAGgttagcatta ... tcgattgcagGCTCTCAATAACTGGGG
EST: gi|149016866|gb|EE045628.2|EE045628
EST:     CAATACTGAATTATGAGAAGGCTGTCCAGCTTAATTGGAATAGCCCACAG                         GCTCTCAATAACTGGGGTCTTGGGCTACAG
genomic: CAATACTGAATTATGAGAAGGCTGTCCAGCTTAATTGGAATAGCCCACAGgttagcatta ... tcgattgcagGCTCTCAATAACTGGGGTCTTGGGCTACAG
EST: gi|74233353|gb|DT641267.1|DT641267
EST:     CAATACTGAATTATGAGAAGGCTGTCCAGCTTAATTGGAATAGCCCACAG                         GCTCTNCA-TAACTGGGGTCTTGGGCTACAG
genomic: CAATACTGAATTATGAGAAGGCTGTCCAGCTTAATTGGAATAGCCCACAGgttagcatta ... tcgattgcagGCTCT-CAATAACTGGGGTCTTGGGCTACAG
EST: gi|148964477|gb|EC905830.2|EC905830
EST:     AATACTGAATTATGAGAAGGCTGTCCAGCTTAATTTGGATTACCCCACAG                         GCTCTCAATAACTGGGG
genomic: AATACTGAATTATGAGAAGGCTGTCCAGCTTAATT-GGAATAGCCCACAGgttagcatta ... tcgattgcagGCTCTCAATAACTGGGG
EST: gi|76281824|gb|DV021392.1|DV021392
EST:     CAATACTGAATTATGAGAAGGCTGTCCAGCTTAATTGGAATAGCCCACAG                         GCTCTCAATAACTGGGGTCTTGGGCTACAG
genomic: CAATACTGAATTATGAGAAGGCTGTCCAGCTTAATTGGAATAGCCCACAGgttagcatta ... tcgattgcagGCTCTCAATAACTGGGGTCTTGGGCTACAG