1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTTTATGTGGTCTTCATGCTGTCAGCTTGCGCTCTGTTCTCAAAAACGTGGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacaaacagctttgcacatctttttatgtaaaattctgggcctgttcggtttcagcgtaaagtgctgcgaagctgctgttacagccagcagctacagta...
species | Zea mays |
transcript | GRMZM2G073498_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG GAACAACAAATGGTGATGCCAGGACATCGTGAGTCAAACTTGCAGAAGGAAEST: gi|166491200|gb|EG075753.1|EG075753
genomic: GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacaaacag ... tattctgcagGAACAACAAATGGTGATGCCAGGACATCGTGAGTCAAACTTGCAGAAGGAA
EST: GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG GAACAACAAATGGTGATGCCAGGACATCGTGAGTCAAACEST: gi|211338836|gb|FL045913.1|FL045913
genomic: GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacaaacag ... tattctgcagGAACAACAAATGGTGATGCCAGGACATCGTGAGTCAAAC
EST: GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG GAACAACAAATGGTGATGCCAGGACATCGTGAGTCAAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacaaacag ... tattctgcagGAACAACAAATGGTGATGCCAGGACATCGTGAGTCAAACTTGCAGAAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTATGTGGTCTTCATGCTGTCAGCTTGCGCTCTGTTCTCAAAAACGTGGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacaaacagctttgcacatctttttatgtaaaattctgggcctgttcggtttcagcgtaaagtgctgcgaagctgctgttacagccagcagctacagta
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA