Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTGCAGCGAAAAGGGGTATGATTCCCTATCTGTAAGTGATGCAAAACAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttagtcttttaaacccccctcctttttctgagtgtatttctatgtgaaatcatatgatagttactgtaaagtataatattgtgaacatggttaacag

Basic information

species Zea mays
transcript GRMZM2G073077_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5055559|gb|AI734446.1|AI734446
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|19058306|gb|BM736973.1|BM736973
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|32845250|gb|CD984931.1|CD984931
EST:     ACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: ACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|211193238|gb|FL445829.1|FL445829
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|32844004|gb|CD983685.1|CD983685
EST:     ACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: ACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|56382240|gb|CV984909.1|CV984909
EST:     CTGTAAGTGATGCAAAACAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAAAG        
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagG
EST: gi|76013187|gb|DT940357.1|DT940357
EST:     CTGTAAGTGATGCAAAACAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG        
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagG
EST: gi|7135363|gb|AW498048.1|AW498048
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|12970972|gb|BG267250.1|BG267250
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|50327367|gb|CO522493.1|CO522493
EST:     CTGTAAGTGATGCAAAACAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG        
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagG
EST: gi|211123288|gb|FL412657.1|FL412657
EST:     TGTAAGTGATGCAAAACAAATGCTTAATGT-CAGTTCTGACCCAGATCTGCACGAGTACATCACAGAG        
genomic: AATGCTTA-TGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagG
EST: gi|78027317|gb|DV495704.1|DV495704
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|18654920|gb|BM499725.1|BM499725
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGCGCCG
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCG
EST: gi|71442771|gb|DR823821.1|DR823821
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|76013186|gb|DT940356.1|DT940356
EST:     CTGTAAGTGATGCAAAACAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG        
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagG
EST: gi|19769759|gb|BQ034480.1|BQ034480
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|71428537|gb|DR809587.1|DR809587
EST:     CTGTAAGTGATGCAAAACAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG        
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagG
EST: gi|30306671|gb|CD001344.1|CD001344
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|8930284|gb|BE225048.1|BE225048
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|110210675|gb|EC892572.1|EC892572
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|28982970|gb|BQ538420.2|BQ538420
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|17931684|gb|BM268644.1|BM268644
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|60353681|gb|DN220654.1|DN220654
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|16920046|gb|BM074472.1|BM074472
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|21331201|gb|BQ486582.1|BQ486582
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCGCGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|19822102|gb|BQ048126.1|BQ048126
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|60343651|gb|DN210624.1|DN210624
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|74240002|gb|DT647916.1|DT647916
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCAGGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|211365708|gb|FL031157.1|FL031157
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|32857529|gb|CD997210.1|CD997210
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|60396436|gb|DN229305.1|DN229305
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|74240003|gb|DT647917.1|DT647917
EST:     CTGTAAGTGATGCAAAACAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG        
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagG
EST: gi|60358231|gb|DN225204.1|DN225204
EST:     CTGTAAGTGATGCAAAACAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG        
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagG
EST: gi|22490601|gb|BU050524.1|BU050524
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|5006235|gb|AI712297.1|AI712297
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|87152277|gb|DY397066.1|DY397066
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|21088919|gb|BQ401232.1|BQ401232
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|6827668|gb|AW331311.1|AW331311
EST:     AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGTTTAAGAATGGCGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|71331372|gb|DR802521.1|DR802521
EST:     CTGTAAGTGATGCAAAACAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG        
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagG
EST: gi|19769355|gb|BQ034076.1|BQ034076
EST:     GAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG                         GAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagGAGCACCCGGAATGGGAGCTTAAGAACGGTGCCGTCTTCTTCCAGAAGGCA
EST: gi|148947219|gb|EC892573.2|EC892573
EST:     CTGTAAGTGATGCAAAACAAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAG        
genomic: AAATGCTTATGTTCAGTTCTGACCAAGATCTGCACGAGTACATCACAGAGgtagctttag ... tggttaacagG