1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTGGCCAACAGGGCCGAGAGCCTCCTGCTCTGCATCAAGCACCGCTTCCCTGGCCTGTCGCAGACCACCCTGGACACCAGCAAGATCCAGTTCAACAAGgtaacctgagttgtgtaaccacatttgggcaagcacacaagatcatatatattagttggcatttccttctttttatttaatccgtcttctcatacagatacagcagacaataaaggcacagttgcctgcactgaaattatgttcgtgattctgatcagatgacctgaactgacaaattttgcag
species | Zea mays |
transcript | GRMZM2G071157_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGGCCTGTCGCAGACCACCCTGGACACCAGCAAGATCCAGTTCAACAAG GATGTTGGGCAAGCGATCCTGGAGAGCTACTCGAGGGTGTTGGAGAGCTTGEST: gi|149086756|gb|EE176296.2|EE176296
genomic: CTGGCCTGTCGCAGACCACCCTGGACACCAGCAAGATCCAGTTCAACAAGgtaacctgag ... aattttgcagGATGTTGGGCAAGCGATCCTGGAGAGCTACTCGAGGGTGTTGGAGAGCTTG
EST: CTGGCCTGTCGCAGACCCCCCTGGACACCAGCAAGATCCAGTTCAACAAG GATGTGGGGCAAGCGATCCTGGAGAGCTACTCGAGGGTGTTGGAGAGCTTGEST: gi|30307209|gb|CD001882.1|CD001882
genomic: CTGGCCTGTCGCAGACCACCCTGGACACCAGCAAGATCCAGTTCAACAAGgtaacctgag ... aattttgcagGATGTTGGGCAAGCGATCCTGGAGAGCTACTCGAGGGTGTTGGAGAGCTTG
EST: CTGGCCTGTCGCAGACCACCCTGGACACCAGCAAGATCCAGTTCAACAAG GATGTTGGGCAAGCGATCCTGGAGAGCTACTCGAGGGTGTTGGAGAGCTTG
genomic: CTGGCCTGTCGCAGACCACCCTGGACACCAGCAAGATCCAGTTCAACAAGgtaacctgag ... aattttgcagGATGTTGGGCAAGCGATCCTGGAGAGCTACTCGAGGGTGTTGGAGAGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGCCAACAGGGCCGAGAGCCTCCTGCTCTGCATCAAGCACCGCTTCCCTGGCCTGTCGCAGACCACCCTGGACACCAGCAAGATCCAGTTCAACAAGgtaacctgagttgtgtaaccacatttgggcaagcacacaagatcatatatattagttggcatttccttctttttatttaatccgtcttctcatacagatacagcagacaataaaggcacagttgcctgcactgaaattatgttcgtgattctgatcagatgacctgaactgacaaattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA