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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtcgccaatcatttttccatatgtatagctgcctaggttctatgcttgctagaagaaaatgctgaagatacaactgcagtgtgttacctgtttctcataaaagctttagagctgacaataacattgagctttcttaatttaacag

Basic information

species Zea mays
transcript GRMZM2G070422_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67015153|gb|CO443902.1|CO443902
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|211267881|gb|FL003946.1|FL003946
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|32914780|gb|CF019592.1|CF019592
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|67017641|gb|CO446390.1|CO446390
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|211135434|gb|FL356365.1|FL356365
EST:     GTCAAATCGAACAAAAGATATGCANGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAA
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAA
EST: gi|31357208|gb|CD441565.1|CD441565
EST:     GATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|31362224|gb|CD446581.1|CD446581
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|67042246|gb|CO468501.1|CO468501
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|31356384|gb|CD440741.1|CD440741
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|84980240|gb|DW530589.1|DW530589
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|6526869|gb|AW216132.1|AW216132
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGNTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|211164083|gb|FL357846.1|FL357846
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTG
EST: gi|9254230|gb|BE344698.1|BE344698
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTATTT
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|31355683|gb|CD440040.1|CD440040
EST:     GTCTTTTTTAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|31361470|gb|CD445827.1|CD445827
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|6022101|gb|AW067029.1|AW067029
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCA
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCA
EST: gi|67018992|gb|CO447741.1|CO447741
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|24774154|gb|CA409408.1|CA409408
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTA
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTA
EST: gi|67019739|gb|CO448488.1|CO448488
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|13150169|gb|BG320491.1|BG320491
EST:     ATGTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: ATGTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|211391003|gb|FL321745.1|FL321745
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGCCAGTAAAAG                         GAAGTTGTTGAATCAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAA-Ggtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTG
EST: gi|31353471|gb|CD437828.1|CD437828
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|7162427|gb|AW520049.1|AW520049
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|111990916|gb|EE332354.1|EE332354
EST:     TATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: TATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|71766309|gb|DR964246.1|DR964246
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|31354494|gb|CD438851.1|CD438851
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|24774062|gb|CA409316.1|CA409316
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|32908050|gb|CF012863.1|CF012863
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|211267880|gb|FL003945.1|FL003945
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
EST: gi|24774150|gb|CA409404.1|CA409404
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACT
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACT
EST: gi|78023662|gb|DV492049.1|DV492049
EST:     GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAG                         GAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG
genomic: GTCAAATCGAACAAAAGATATGCAGGGGCATCAAACTGGACAGTAAAGgtatgcagtc ... aatttaacagGAAGTTGTTGAATCAGTGAGGAATGATTTTGGCAGCATTGACATACTAGTG