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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatcttttctcatcttttgttatttgtatgcttgcttcttctttaataaatttaatttaacagggacaatttaggtcatagctagagactgactagacatggttaattcttctgtttgctaattgcaaacatgctgcag

Basic information

species Zea mays
transcript GRMZM2G069758_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 5
GTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatcttttctcatcttttgttatttgtatgcttgcttcttctttaataa--atttaatttaacagggacaatttaggtcatagctagagactgactagacatggttaattcttctgtttgctaattgcaaacatgctgcag
||||||| || || ||||||||||||  |||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||  |||| | |     |   |  | |||  |    |   ||||| | |||| |||||   |||||||||  ||||||| ||   |||  | ||   |||||||||||||        | ||||||
GTTATATTGGATCTGTTTCCTTTTTAACTACTGTACTACAAGTTGTTGACAAATTACGATCAGTCAATCCTGATCTTGTATATGgtaatcttttctcatctttcattatctattcttctctatggtgttttgtctctaccaaattttataggg-caatt-gtgtcatagctcaagactgattacgaatgactgata--tctgtttgctaat-------gttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211278750|gb|FL388232.1|FL388232
EST:     GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATG                         TTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
genomic: GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatctttt ... catgctgcagTTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
EST: gi|86471052|gb|DY237422.1|DY237422
EST:     GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATG                         TTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
genomic: GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatctttt ... catgctgcagTTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
EST: gi|33096068|gb|CF056062.1|CF056062
EST:     GCGATCAGTTAATCCTGATCTTGTATATG                         TTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGGGC
genomic: GCGATCAGTTAATCCTGATCTTGTATATGgtaatctttt ... catgctgcagTTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
EST: gi|17931888|gb|BM268848.1|BM268848
EST:     GCT-CAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATG                         TTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
genomic: GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatctttt ... catgctgcagTTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
EST: gi|67022839|gb|CO451588.1|CO451588
EST:     GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATG                         TTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
genomic: GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatctttt ... catgctgcagTTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
EST: gi|40303606|gb|CK347993.1|CK347993
EST:     GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATG                         TTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
genomic: GCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatctttt ... catgctgcagTTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
EST: gi|16922789|gb|BM075781.1|BM075781
EST:     AAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATG                         TTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC
genomic: AAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATGgtaatctttt ... catgctgcagTTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGC