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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACAGGCCAAGAATTTACTCATGTTGCGAGAAGCAGACGTGTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttccttcatgatattatggatatctaataaaatctgcaaaacgatatgatcttgttgtacaaatgtccagtttccttgtctcattgttatctta...

Basic information

species Zea mays
transcript GRMZM2G069631_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 6
GTTACAGGCCAAGAATTTACTCATGTTGCGAGAAGCAGACGTGTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttccttcatgatattatggatatctaataaaatctgcaaaacgatatgatcttgttgtacaaatgtccagtttccttgtctcattgttatctta---
|| || |||||||| || |  | |||  | ||| || | ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| || |    || ||     | | || ||| | |     | |   ||||  ||| |||     | |   |   
GTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCACATGCTCATGATTACCATATTAATTCCATTTCAAATAATAGgttagctaccttcctgatattatggatatctgatcaggcttgtaattt--tgtaattttgat-tcttgttctgttgttttattggctccaaactgttacacat

upper sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
GTTACAGGCCAAGAATTTACTCATGTTGCGAGAAGCAGACGTGTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttccttcatgatattatggatatctaataaaatctgcaaaacgatatgatcttgttgtacaaatgtcc--agtttccttgtctcattgttatctta-----
|| ||  |||| ||    | |   || ||  || |  |  | |||||||||||||| ||||| || ||||||||||| ||||||||||| |||| |      ||    |  ||  || |  ||| |  |  |||   |  | |   |||||| | |     | ||   | ||   ||  |  | ||||   ||      
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtga------tttgaaaccttgagggttcctattttaggctgttcagtg-tggaatcttgctttttggttatctttatttgttttaacgtagtgttgatttgaaagt

upper sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA08G20830.4 (Glycine max), 5'ss of exon 6
GTTACAGGCCAAGAATTTACTCATGTTGCGAGAAGCAGACGTGTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttccttcatgatattatggatatctaataaaatctgcaaaacgatatgatcttgttgtacaaatgtcc--agtttccttgtctcattgttatctta-----
|| ||  |||| ||    | |    | ||  || || |  | |||||||||||||| ||||| || ||||||||||| ||||||||||| |||| |      ||    |  |   || |  |||  | | ||||   |  |  |  |||||| | |     | ||   | ||   || |   | ||||   ||      
GTAACCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtga------tttgaaacctcgagggttcctataatagtctgttcagtgtca-aatcttgctttttggttatctttatttcttttattgtagtgttgatttgaaagt

upper sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 6
GTTACAGGCCAAGAATTTACTCATGTTGCGAGAAGCAGACGTGTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttccttcatgatattatggatatctaataaaatctgcaaaacgatatgatcttgttgtacaa-atgtccagtttccttgtctcat--tgttatctta------
|| |   | || ||    |     || || ||  |  |  |  | ||||| |||||||||||||| ||||| ||||||||||||||||| ||||    |  | | ||  | ||    ||||      |  | |         |||||| ||||  ||||  |||||| ||||   | | |     |||  || ||      
GTGATGAGTCATGAGACAAGCTCAGTGGCCAGGTGTCGGAGAATTTATGCTCATGCCCATGACTATCATATCAATTCCATTTCAAATAACAGgtgcactcacat-atcttgttgaacatattcctctacttttt-------gtatgat-ttgtattacagcatgtcctgtttttatatattggcatgtattcctaattgga

upper sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
GTTACAGGCCAAGAATTTACTCATGTTGCGAGAAGCAGACGTGTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttccttcatgatattatggatatctaataaaatctgcaaaacgatatgatcttgttgtacaaatgtccagtttccttgtctcattg--ttatctta-------
||  || |||  ||    |  |  || || ||| |  |  | || ||||| ||||| || ||||| ||||| ||||| ||||||||||||||||  ||| |       ||| | |   | ||  ||| ||| |        |  || |||  ||  | |  ||| ||  ||  |  | |  | |  ||||||||       
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgt-ggttccacaacccatactttaattctcgcatataatgt--------agctgttctgtttacatatctgttcaccttgttcatgtattgggtttatcttatgacctt

upper sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 6
GTTACAGGCCAAGAATTTACTCATGTT-GCGAGAAGCAGACGTGTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttccttcatgatattatggatatctaataaaatctgcaaaacgatatgatcttgttgtacaaatgtccagtttccttgtctcattgttatctta--------
  ||||   |||  |   |  | | |  || ||| |  || |  ||||||| ||||| |||||||| ||||| |||||||||||||| || |||| | ||   |   ||   |||| | | | |||     | |    ||  ||||    |||||| ||  || | || |||||||   |  | | | |   |        
-GTACACAGCAATGAAACAAGCCTATCAGCTAGATGTCGAAGAATATATGCTCATGCTCATGACTATCATATCAATTCCATTTCAAACAACAGgtgaattctttaattgg--ttataggtttttaaatttttatcttgaatcatat----ttgttg-acttat-ttcaatttcctttcatgttggatttagcatcaaactt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211079477|gb|FL398611.1|FL398611
EST:     GTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAG                         CGATGGAGAAACGTTCATATCAGCAGATGATCTGCGAATAAACCTTTGGAA
genomic: GTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttcc ... ttgttcacagCGATGGAGAAACGTTCATATCAGCAGATGATCTGCGAATAAACCTTTGGAA
EST: gi|211374954|gb|FL429396.1|FL429396
EST:     GTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAG                         CGATGGAGAAACGTTCATATCAGCAGATGATCTGCGAATAAACCTTTGGAA
genomic: GTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttcc ... ttgttcacagCGATGGAGAAACGTTCATATCAGCAGATGATCTGCGAATAAACCTTTGGAA
EST: gi|67012325|gb|CO441074.1|CO441074
EST:     GTATATGCCCATGCCCATGACTACCATATTAATTCCATCTCAAATAATAG                         CGATGGAGAAACGTTCATATCAGCAGATGATCTGCGAATAAACCTTTGGAA
genomic: GTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttcc ... ttgttcacagCGATGGAGAAACGTTCATATCAGCAGATGATCTGCGAATAAACCTTTGGAA
EST: gi|71772341|gb|DR970277.1|DR970277
EST:     GTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAG                         CGATGGAGAAACGTTCATATCAGCAGATGATCTGCGAATAAACCTTTGGAA
genomic: GTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttcc ... ttgttcacagCGATGGAGAAACGTTCATATCAGCAGATGATCTGCGAATAAACCTTTGGAA