Sequence
atgc intronic sequence ATGC exonic sequenceCATCTTGCAGAGCATTGCAGGGCTGAGTATCCCAAGGTCACAAATTTTGTCTTATGGATTCTTGCAGAACTTGCTGTTGTTGCATGTGACATTCCTGAAGgtatcaaaaatacatttcagttgctttttgcatgttttttaaatttaagcacagagctacttgggttttatccagccatttaataatactgcagatggtg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g46310.3 (Oryza sativa), 5'ss of exon 6
CATCTTGCAGAGCATTGCAGGGCTGAGTATCCCAAGGTCACAAATTTTGTCTTATGGATTCTTGCAGAACTTGCTGTTGTTGCATGTGACATTCCTGAAGgtatcaaaa---atacatttcagttgcttttt----gcatgttttttaaatttaagca----cagagctacttgggtttta---tccagccatttaataatactgcagatggtg
|| || || ||||||||||| ||||| ||||| |||| |||||||| | |||||||||||||| ||||| ||||| |||||||| |||||||||||||||| || | | | ||| || | || || | || |||| |||||| | |||| ||| ||| | || | |||| ||| || |
CACCTGGCCGAGCATTGCAGAGCTGAATATCCAAAGGCTACAAATTTCATATTATGGATTCTTGCGGAACTAGCTGTAGTTGCATGCGACATTCCTGAAGgtaccagagtgtaaaattttgagcttctgttgcatgacttgcgttttgcatttaatgagttgcagatctaattgaagtataaagttcagctgtttcatga--------------
upper sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 6
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 6
CATCTTGCAGAGCATTGCAGGGCTGAGTATCCCAAGGTCACAAATTTTGTCTTATGGATTCTTGCAGAACTTGCTGTTGTTGCATGTGACATTCCTGAAGgtatcaaaaatacatttcagttgctttttgcatgttttttaaatttaagcacagagctacttgggttttatccagcc--atttaataatactgcagatggtg-----
||| | |||||||| ||||| ||| ||||| ||||| | || || || ||||| ||||||| ||| ||||||| ||||||||||||||||||||||||| | ||| | ||| | ||||| | ||| ||| | | | | || | | ||| || || | | || | | |
CATTTAGCAGAGCACTGCAGAATTGAATATCCAAAGGTGCCTAACTTCATCCTATGGGTTCTTGCTGAAATTGCTGTAGTTGCATGTGACATTCCTGAAGgta---ataatgccttttatgtgcttg----aaatttaataatatcgtacttcgttatcattcgttattagaaggcttggattggtgaaaccatctagagagggacaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71767113|gb|DR965050.1|DR965050EST: CTTATGGATTCTTGCAGAACTTGCTGTTGTTGCATGTGACATTCCTGAAG TAATTGGAACTGCTTTTGCTCTAAACATGCTGTTCAGAATCCCAGTATGGT
genomic: CTTATGGATTCTTGCAGAACTTGCTGTTGTTGCATGTGACATTCCTGAAGgtatcaaaaa ... ctctttgtagTAATTGGAACTGCTTTTGCTCTAAACATGCTGTTCAGAATCCCAGTATGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATCTTGCAGAGCATTGCAGGGCTGAGTATCCCAAGGTCACAAATTTTGTCTTATGGATTCTTGCAGAACTTGCTGTTGTTGCATGTGACATTCCTGAAGgtatcaaaaatacatttcagttgctttttgcatgttttttaaatttaagcacagagctacttgggttttatccagccatttaataatactgcagatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG