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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTAAATATGGGGCAGCCTGCAAATATCATCATCCTCAATACTTCAGTGGACCAAAGTCTAACTGCATACTGAGCCCTCTGGGTCTCCCCCTCCGTCCTgtgagtagatctcatcatgttttcattcaggaaatttctatgttgtctacatgaaatataatgcatattggtttgcatcctttgattaccactttgcatt...

Basic information

species Zea mays
transcript GRMZM2G069009_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069009_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g15350.1 (Oryza sativa), 5'ss of exon 6
CTGTAAATATGGGGCAGCCTGCAAATATCATCATCCTCAATACTTCAGTGGACCAAAGTCTAACTGCATACTGAGCCCTCTGGGTCTCCCCCTCCGTCCTgtgagtagatctcat-catgttttcattcaggaaatttctatgttgtctacatgaaatataatgcatattggtttgcatcctttgattaccactttgcatt---
 ||||||| |||  | || |||||||||||||||||||| || || | |  ||| ||||||||||| || ||||| ||||| ||||| || || || || |||||||| ||  |  ||| | | | || |    ||   ||   | | |  |  |         ||   | ||  |   |   ||  || | |||     |   
TTGTAAATTTGGATCTGCATGCAAATATCATCATCCTCAGTATTTGAATACACCTAAGTCTAACTGTATGCTGAGTCCTCTTGGTCTTCCTCTTCGGCCGgtgagtagctccaacacatatctgcttttat---atgcttaaactatgtgtagcacgctgttgccaggatagtcagt-ccaaatgtatatcgcttgagtctgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78114959|gb|DV533347.1|DV533347
EST:     AAAGTCTAACTGCATACTGAGCCCTCTGGGTCTCCCCCTCCGTCCT                         GGTTCTCAGCCATGTGCTTACTATGCACACCATGGGTATTGCAAGTTTGGG
genomic: AAAGTCTAACTGCATACTGAGCCCTCTGGGTCTCCCCCTCCGTCCTgtgagtagat ... tgatgtgcagGGTTCTCAGCCATGTGCTTACTATGCACACCATGGGTATTGCAAGTTTGGG