1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTTCTGCCATCATCAGAATATATATCAGAAGATAATACTATCAAGAAACAAGTAACGAGATATAAGATGCATCAGCACCTCAAATTTTATCAGGGTGAGgtgtgtagattggaatgcttgatccaagataaaattccactctcttttgcgcacttaataacatccatcgatgatacaaacttgatcaaaataccttaaggcttgctatttacggcactcttgtaatattataccgtctcttgctttttgacatcaggttgattcccaatacattcttgcacacatttcag
species | Zea mays |
transcript | GRMZM2G067299_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGTAACGAGATATAAGATGCATCAGCACCTCAAATTTTATCAGGGTGAG ATATCGAAGACTAGTGAGTACAATCCTCTTGATCTATTTTCTGGGTCAAAAEST: gi|78112747|gb|DV531141.1|DV531141
genomic: AAGTAACGAGATATAAGATGCATCAGCACCTCAAATTTTATCAGGGTGAGgtgtgtagat ... cacatttcagATATCGAAGACTAGTGAGTACAATCCTCTTGATCTATTTTCTGGGTCAAAA
EST: AAGTAACGAGATATAAGATGCATCAGCACCTCAAATTTTATCAGGGTGAG ATATCGAAGACTAGTGAGTACAATCCTCTTGATCTATTTTCTGGGTCAAAEST: gi|9952572|gb|BE639260.1|BE639260
genomic: AAGTAACGAGATATAAGATGCATCAGCACCTCAAATTTTATCAGGGTGAGgtgtgtagat ... cacatttcagATATCGAAGACTAGTGAGTACAATCCTCTTGATCTATTTTCTGGGTCAAA
EST: AAGTAACGAGATATAAGATGCATCAGCACCTCAAATTTTCTCAGGGTGAG ATATCGAAGACTAGTGAGTACAATCCTCTTGATCTATTTTCTGGGTCAAAA
genomic: AAGTAACGAGATATAAGATGCATCAGCACCTCAAATTTTATCAGGGTGAGgtgtgtagat ... cacatttcagATATCGAAGACTAGTGAGTACAATCCTCTTGATCTATTTTCTGGGTCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCTGCCATCATCAGAATATATATCAGAAGATAATACTATCAAGAAACAAGTAACGAGATATAAGATGCATCAGCACCTCAAATTTTATCAGGGTGAGgtgtgtagattggaatgcttgatccaagataaaattccactctcttttgcgcacttaataacatccatcgatgatacaaacttgatcaaaataccttaaggcttgctatttacggcactcttgtaatattataccgtctcttgctttttgacatcaggttgattcccaatacattcttgcacacatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG