1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATGAATGAGATGATCGAGAACCCCTATGTCTTTTACAATGCTTTATTCACAGAAGATGATTATGGCTTTCATGACGAGCTCCGTTAGTTCCCAATTCAAgtaagggcacaaacttgtactctgttcttgtttctgcatctgccaacttccatttgttcacaactctcatactgtag
species | Zea mays |
transcript | GRMZM2G066614_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGATGATTATGGCTTTCATGACGAGCTCCGTTAGTTCCCAAGTCAA CA-CA-AA-GCTTTATGGAATCACCACTGTAGGAAGTCGGAAGACTTTGTTEST: gi|5343190|gb|AI795375.1|AI795375
genomic: CAGAAGATGATTATGGCTTTCATGACGAGCTCCGTTAGTTCCCAATTCAAgtaagggcac ... catactgtagCAGCACAAAGCTTTATGGAATCACCACTGTAGGAAGTCGGAAGACTTTGTT
EST: CAGAAGATGATTATGGCTTTCATGACGAGCTCCGTTAGTTCCCAATTCAA CAGCACAAAGCTTTATGGAATCACCACTGTAGGAAGTCGGAAGACTTTEST: gi|5847122|gb|AW000201.1|AW000201
genomic: CAGAAGATGATTATGGCTTTCATGACGAGCTCCGTTAGTTCCCAATTCAAgtaagggcac ... catactgtagCAGCACAAAGCTTTATGGAATCACCACTGTAGGAAGTCGGAAGACTTT
EST: CAGAAGATGATTATGGCTTTCATGACGAGCTCCGTTAGTTCCCAATTCAA CAGCACANAGCTTTATGGAATCACCACTGTAGGAAGTCGGAAGACTT-GT-
genomic: CAGAAGATGATTATGGCTTTCATGACGAGCTCCGTTAGTTCCCAATTCAAgtaagggcac ... catactgtagCAGCACAAAGCTTTATGGAATCACCACTGTAGGAAGTCGGAAGACTTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGAATGAGATGATCGAGAACCCCTATGTCTTTTACAATGCTTTATTCACAGAAGATGATTATGGCTTTCATGACGAGCTCCGTTAGTTCCCAATTCAAgtaagggcacaaacttgtactctgttcttgtttctgcatctgccaacttccatttgttcacaactctcatactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG