1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGCTCTGAGTTTTGAGGATGGATCTATGGATGGTTACACTATCGCATTTGGGATCAGAAATGTGACGCACATTGAGAAAGCTCTGTCAGAAGCTTACAGgtcggctaatttagaaccctaacaattattattgctcatgtttaaattattactgtttgaacttcagtatctgtgtctattcttcgtgattaagtttttt...
species | Zea mays |
transcript | GRMZM2G065210_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGGATCAGAAATGTGACGCACATTGAGAAAGCTCTGTCAGAAGCTTACAG GGTTCTAAAGCAAGGGGGGAGGTTCCTATGCTTGGAGTTGAGTCATGTGGAEST: gi|71440104|gb|DR821154.1|DR821154
genomic: GGGATCAGAAATGTGACGCACATTGAGAAAGCTCTGTCAGAAGCTTACAGgtcggctaat ... cttgcttcagGGTTCTAAAGCAAGGGGGGAGGTTCCTATGCTTGGAGTTGAGTCATGTGGA
EST: GGGATCAGAAATGTGACGCACATTGAGAAAGCTCTGTCAGAAGCTTACAG GGTTCTAAAGCAAGGGGGGAGGTTCCTATGCTTGGAGTTGAGTCATGTGGAEST: gi|32809632|gb|CD961866.1|CD961866
genomic: GGGATCAGAAATGTGACGCACATTGAGAAAGCTCTGTCAGAAGCTTACAGgtcggctaat ... cttgcttcagGGTTCTAAAGCAAGGGGGGAGGTTCCTATGCTTGGAGTTGAGTCATGTGGA
EST: GGGATCAGAAATGTGACGCACATTGAGAAAGCTCTGTCAGAAGCTTACAG GGTTCTAAAGCAAGGGGGGAGGTTCCTATGCTTGGAGTTGAGTCATGTGGAEST: gi|32791444|gb|CD943680.1|CD943680
genomic: GGGATCAGAAATGTGACGCACATTGAGAAAGCTCTGTCAGAAGCTTACAGgtcggctaat ... cttgcttcagGGTTCTAAAGCAAGGGGGGAGGTTCCTATGCTTGGAGTTGAGTCATGTGGA
EST: GGGATCAGAAATGTGACGCACATTGAGAAAGCTCTGTCAGAAGCTTACAG GGTTCTAAAGCAAGGGGGGAGGTTCCTATGCTTGGAGTTGAGTCATGTGGA
genomic: GGGATCAGAAATGTGACGCACATTGAGAAAGCTCTGTCAGAAGCTTACAGgtcggctaat ... cttgcttcagGGTTCTAAAGCAAGGGGGGAGGTTCCTATGCTTGGAGTTGAGTCATGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTCTGAGTTTTGAGGATGGATCTATGGATGGTTACACTATCGCATTTGGGATCAGAAATGTGACGCACATTGAGAAAGCTCTGTCAGAAGCTTACAGgtcggctaatttagaaccctaacaattattattgctcatgtttaaattattactgtttgaacttcagtatctgtgtctattcttcgtgattaagtttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC