1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCATTATTGCTTGCAGCAAGGGAGGAACCAGTATTGAAGATCTTGCGGAGAAGTATCCTGATATGATTATTAAGgttaagtgccctaatattattttgggctcagtgtttggctctgttgtgttccatatttacatgatacttctctaaattgtgttacttatgtttaaatttaatttatgggaataccag
species | Zea mays |
transcript | GRMZM2G064695_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAACCAGTATTGAAGATCTTGCGGAGAAGTATCCTGATATGATTATTAAG GTTCCTATTGATGTATTTAAAGGAATCACAGATGAGGATGCAGCTAEST: gi|149076126|gb|EE164711.2|EE164711
genomic: GAACCAGTATTGAAGATCTTGCGGAGAAGTATCCTGATATGATTATTAAGgttaagtgcc ... ggaataccagGTTCCTATTGATGTATTTAAAGGAATCACAGATGAGGATGCAGCTA
EST: GAACCAGTATTGAAGATCTTGCGGAGAAGTATCCTGATATGATTATTAAG GTTCCTATTGATGTATTTAAAGGAATCACAGATGAGGATGCAGCTAAAGTTEST: gi|148935326|gb|EC879367.2|EC879367
genomic: GAACCAGTATTGAAGATCTTGCGGAGAAGTATCCTGATATGATTATTAAGgttaagtgcc ... ggaataccagGTTCCTATTGATGTATTTAAAGGAATCACAGATGAGGATGCAGCTAAAGTT
EST: GAACCAGTATTGAAGATCTTGCGGAGAAGTATCCTGATATGATTATTAAG GTTCCTATTGATGTATTTAAAAGGA-TCACAGATGAGGATGCAGCTAAAGT
genomic: GAACCAGTATTGAAGATCTTGCGGAGAAGTATCCTGATATGATTATTAAGgttaagtgcc ... ggaataccagGTTCCTATTGATGTATTTAAA-GGAATCACAGATGAGGATGCAGCTAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCATTATTGCTTGCAGCAAGGGAGGAACCAGTATTGAAGATCTTGCGGAGAAGTATCCTGATATGATTATTAAGgttaagtgccctaatattattttgggctcagtgtttggctctgttgtgttccatatttacatgatacttctctaaattgtgttacttatgtttaaatttaatttatgggaataccag
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGT