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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCATAACGGAGATATCTCGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagcttatgctttcatcagattgctatattgttgctttgatttccgtatgcagtatctcatgtgttgctacctttacgatgcag

Basic information

species Zea mays
transcript GRMZM2G064426_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338423|gb|DN205396.1|DN205396
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACC
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACC
EST: gi|31664550|gb|CD573483.1|CD573483
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCAAGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|463317|gb|T18284.1|T18284
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|453328|gb|T15302.1|T15302
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|33096563|gb|CF056557.1|CF056557
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTA-GTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|71311885|gb|DR792413.1|DR792413
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|93017163|gb|EB642683.1|EB642683
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|71446912|gb|DR827962.1|DR827962
EST:     CGGACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAN                         GCGGGTTTTTGGTCGCAGTTATTTA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTA
EST: gi|60397343|gb|DN230159.1|DN230159
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|71311886|gb|DR792414.1|DR792414
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|453331|gb|T15305.1|T15305
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|149102150|gb|EE287580.2|EE287580
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|149102149|gb|EE188096.2|EE188096
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|60344410|gb|DN211383.1|DN211383
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|71315806|gb|DR794556.1|DR794556
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACCCCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|149107729|gb|EE189603.2|EE189603
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCCTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: gi|71315807|gb|DR794557.1|DR794557
EST:     CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG                         GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACCATAACGGAGATATCTCGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagcttatgctttcatcagattgctatattgttgctttgatttccgtatgcagtatctcatgtgttgctacctttacgatgcag

- - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT