1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GTCCTTGGTGGAATGAGAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgcatgcatcctcttcatgatgctatgttagcatagtccatagtgtactattagcttgtgcccattctatcaaaaatatgtacacagttccaa...
species | Zea mays |
transcript | GRMZM2G064023_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAG GGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAEST: gi|149090362|gb|EE179668.2|EE179668
genomic: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCA
EST: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAG GGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAEST: gi|149082725|gb|EE171943.2|EE171943
genomic: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCA
EST: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAG GGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAEST: gi|149077813|gb|EE166538.2|EE166538
genomic: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCA
EST: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAG GGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAEST: gi|8103179|gb|AW927835.1|AW927835
genomic: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCA
EST: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAG GGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAEST: gi|213174510|gb|FM184748.1|FM184748
genomic: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCA
EST: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAG GGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAEST: gi|211399063|gb|FL099822.1|FL099822
genomic: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCA
EST: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAG GGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAEST: gi|71450120|gb|DR831170.1|DR831170
genomic: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCA
EST: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAG GGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAEST: gi|32859373|gb|CD999054.1|CD999054
genomic: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCA
EST: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAG GGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCAEST: gi|76287895|gb|DV027463.1|DV027463
genomic: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCA
EST: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAG GGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCA
genomic: GAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGTCTCTCGATTCCAGAGTGCCAAAAAGTGCTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTTGGTGGAATGAGAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgcatgcatcctcttcatgatgctatgttagcatagtccatagtgtactattagcttgtgcccattctatcaaaaatatgtacacagttccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG