1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAAGGTGTACCGCGGCCAGCTCGGCGATGGCAGAGTCGTTGCCGTGAAGAAGCTTAGGCCGCTAGGAGGCACGGACGAAGACTTGGAGTTCCTGTCAGAGgtacgcgaactagactgccaaagcagcagccttgcgaatggcagggcagcaccagccattgcggttcctcttttcatctctgcgacaacgtgtgctggatgatgcgtag
species | Zea mays |
transcript | GRMZM2G063897_T05 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCTTAGGCCGCTAGGAGGCACGGACGAAGACTTGGAGTTCCTGTCAGAG ATCGAGCTGCTGTCGAGGCTGAACCACTGCCACGTGGTGCCGTTGCTGGGGEST: gi|50323693|gb|CO518819.1|CO518819
genomic: AGCTTAGGCCGCTAGGAGGCACGGACGAAGACTTGGAGTTCCTGTCAGAGgtacgcgaac ... tgatgcgtagATCGAGCTGCTGTCGAGGCTGAACCACTGCCACGTGGTGCCGTTGCTGGGG
EST: AGCTTAGGCCGCTAGGAGGCACGGACGAAGACTTGGAGTTCCTGTCAGAG ATCGAGCTGCTGTCGAGGCTGAACCACTGCCACGTGGTGCCGTTGCTGGGGEST: gi|78086186|gb|DV514579.1|DV514579
genomic: AGCTTAGGCCGCTAGGAGGCACGGACGAAGACTTGGAGTTCCTGTCAGAGgtacgcgaac ... tgatgcgtagATCGAGCTGCTGTCGAGGCTGAACCACTGCCACGTGGTGCCGTTGCTGGGG
EST: AGCTTAGGCCGCTAGGAGGCACGGACGAAGACTTGGAGTTCCTGTCAGAG ATCGAGCTGCTGTCGAGGCTGAACCACTGCCACGTGGTGCCGTTGCTGGGG
genomic: AGCTTAGGCCGCTAGGAGGCACGGACGAAGACTTGGAGTTCCTGTCAGAGgtacgcgaac ... tgatgcgtagATCGAGCTGCTGTCGAGGCTGAACCACTGCCACGTGGTGCCGTTGCTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGTGTACCGCGGCCAGCTCGGCGATGGCAGAGTCGTTGCCGTGAAGAAGCTTAGGCCGCTAGGAGGCACGGACGAAGACTTGGAGTTCCTGTCAGAGgtacgcgaactagactgccaaagcagcagccttgcgaatggcagggcagcaccagccattgcggttcctcttttcatctctgcgacaacgtgtgctggatgatgcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG