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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgtagttccactccgcccctaaaattttcacggtcaagtaggatacttctgaagttctttggagttcattctcaaaacaccattgttagaggaa...

Basic information

species Zea mays
transcript GRMZM2G062425_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062425_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g21830.1 (Oryza sativa), 5'ss of exon 6
TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgtagttccactccgcccctaa--aattttcacggtcaagtaggatacttctgaagttctttggagttcattctcaaaacaccattgttagaggaa---
||||||||| ||||||||||| || || ||||||||||| ||||||  ||||||  | ||||| |||||||||||| || || |   |       | |  | |||||||  |  |||| ||   |  ||  ||| |   || ||  |  ||||  |  || | ||| |||     
TTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAGgttagcagtggtcctgttttctaagttatcacttttcacttttcagtatgaagttgttgtggtttt---gaatttgtaatcaagtc--caatattaaaggtgttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60346456|gb|DN213429.1|DN213429
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|60350894|gb|DN217867.1|DN217867
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|60340981|gb|DN207954.1|DN207954
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|211235601|gb|FL469488.1|FL469488
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTACAATATATGGCGCGAGCCT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|32916032|gb|CF020844.1|CF020844
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|60400550|gb|DN233357.1|DN233357
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|18654978|gb|BM499783.1|BM499783
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|211409605|gb|FL451596.1|FL451596
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|149058791|gb|EE156812.2|EE156812
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTTTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|30087019|gb|CB885227.1|CB885227
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|4646952|gb|AI622027.1|AI622027
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAAAG                         GTGCATTTTGTTCTGTTCTCGGNCGGCCTTTNCAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|71768330|gb|DR966267.1|DR966267
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|27769705|gb|CB042895.1|CB042895
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|33091799|gb|CF051793.1|CF051793
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTACAATATATGGGCGCGAGCC
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATAT-GGCGCGAGAC
EST: gi|60337208|gb|DN204181.1|DN204181
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|71760661|gb|DR958598.1|DR958598
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTTTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|18180255|gb|BM381465.1|BM381465
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|32934766|gb|CF039578.1|CF039578
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|91874149|gb|EB404106.1|EB404106
EST:     CAAAAATAGCTGTTTTTTCCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTTTGTTTTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|29544033|gb|CB604413.1|CB604413
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|60347033|gb|DN214006.1|DN214006
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|12968348|gb|BG265294.1|BG265294
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCAAAACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|32855392|gb|CD995073.1|CD995073
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|71444605|gb|DR825655.1|DR825655
EST:     CAAAAATAGCTGTTTTTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTTTGTTTTTGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|27576007|gb|CA998701.1|CA998701
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|20208345|gb|BQ134434.1|BQ134434
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|211448985|gb|FL452542.1|FL452542
EST:     CAAAAATAGCTGTTTYTACCGCACAAAA-TTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTYTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|76284272|gb|DV023840.1|DV023840
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTTTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|78073968|gb|DV502402.1|DV502402
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|60339297|gb|DN206270.1|DN206270
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|50322938|gb|CO518064.1|CO518064
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|88752056|gb|DY536197.1|DY536197
EST:     CAAAAATAGCTGTTTTTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTTTGTTTTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|166645593|gb|EG232850.1|EG232850
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAA-TTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCG
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCG
EST: gi|166503445|gb|EG201023.1|EG201023
EST:     AATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: AATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|78544379|gb|DV621877.1|DV621877
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|8516517|gb|BE123242.1|BE123242
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTATAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|71775282|gb|DR973160.1|DR973160
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|32916033|gb|CF020845.1|CF020845
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|27521916|gb|CA989022.1|CA989022
EST:     CAAAAATAGCTGTTTTTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTTTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|30031764|gb|CB833615.1|CB833615
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|211432061|gb|FL422432.1|FL422432
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|50334455|gb|CO529581.1|CO529581
EST:     CAAAAATAGCTGTTTTTCCCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGCCGCCCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|16927502|gb|BM080571.1|BM080571
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|60339706|gb|DN206679.1|DN206679
EST:     CAAAAATAGCTGTTTCTACCGCACAGAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTCTCGGATGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT
EST: gi|78118087|gb|DV536474.1|DV536474
EST:     CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG                         GTGCATTTTGTTCTGTTTTCGGACGACCTTTACAATATATGGCGCGAGACT
genomic: CAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgta ... atttgtgcagGTGCATTTTGTTCTGTTCTCGGACGACCTTTACAATATATGGCGCGAGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAGgttagctgtagttccactccgcccctaaaattttcacggtcaagtaggatacttctgaagttctttggagttcattctcaaaacaccattgttagaggaa

- - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT