Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATGCGGGGAAACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgctgtcgcgagctgtactatggttttgttgtggcgtttggttgaaaccacaaatggattaatcttgtttggtgtctgtgctttccag

Basic information

species Zea mays
transcript GRMZM2G062076_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062076_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g01700.1 (Oryza sativa), 5'ss of exon 6
AACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATGCGGGGAAACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgctgtcgcgagctgtactatggttttgttgtggcgtttggttgaaaccacaaatggattaatcttgtttggtgtctgtgctttccag
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||| ||||| ||||| || || ||||||| ||||||||||||||   |  |    ||     || || |  |       | ||   |  | | |  |   |     ||| |  | |    | | | |  | | |||
AACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTAAGAGAAGgttt-acac-acagctcatcgtgctgtattacatgcttcgctaatattagcacacttgatgaacttatttctatcctattttttttttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211094640|gb|FL030912.1|FL030912
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|9824885|gb|BE574982.1|BE574982
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAG
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAG
EST: gi|60357821|gb|DN224794.1|DN224794
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|14245489|gb|BG874071.1|BG874071
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60348926|gb|DN215899.1|DN215899
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|19769623|gb|BQ034344.1|BQ034344
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|19822011|gb|BQ048035.1|BQ048035
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|149074288|gb|EE162665.2|EE162665
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|51592965|gb|CV072111.1|CV072111
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|14203855|gb|BG837532.1|BG837532
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|4646735|gb|AI621810.1|AI621810
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGCCGNCGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|28987594|gb|CB351712.1|CB351712
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|166648076|gb|EG229661.1|EG229661
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTCCAGTGTTAAGAGAAG                         GTGGGACGACG
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACG
EST: gi|60357589|gb|DN224562.1|DN224562
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|211094641|gb|FL030913.1|FL030913
EST:     AACCCGTTGATTA-TATCAATAATGCTGGCTCCTTCAGTGTTAAGAGA-G                         GTGGGACGACGACGTGGTATTCA-GAATCAAGCAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCAC
EST: gi|71318075|gb|DR795799.1|DR795799
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|211094644|gb|FL030916.1|FL030916
EST:     ACCCGTTGATTA-TATCAACAATGCTGGCTCCTTCAGTGTTAAGAAGA-G                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACTA-GA
genomic: ACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGA-GAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGA
EST: gi|4938781|gb|AI691189.1|AI691189
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60341620|gb|DN208593.1|DN208593
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|94479969|gb|EB708927.1|EB708927
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCCCGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60357962|gb|DN224935.1|DN224935
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|44901479|gb|CK828024.1|CK828024
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|37391486|gb|CF632986.1|CF632986
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|37397360|gb|CF635977.1|CF635977
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|67015842|gb|CO444591.1|CO444591
EST:     AACCCGTTGATTAATATCAACAATGCTGGATCCTTCAGTGTTAAGAGAAA                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|29130980|gb|CB381684.1|CB381684
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCCAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|19769787|gb|BQ034508.1|BQ034508
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|40334927|gb|CK368997.1|CK368997
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCNAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|71318073|gb|DR795798.1|DR795798
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGAGGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|28910213|gb|CB331325.1|CB331325
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|109637584|gb|EC591129.1|EC591129
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60395043|gb|DN227912.1|DN227912
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGAGGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|4647277|gb|AI622352.1|AI622352
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTNNNNNNNG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60346299|gb|DN213272.1|DN213272
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|14245396|gb|BG873978.1|BG873978
EST:     GTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: GTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60397411|gb|DN230227.1|DN230227
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60352503|gb|DN219476.1|DN219476
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGAGGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|211444750|gb|FL452517.1|FL452517
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60351765|gb|DN218738.1|DN218738
EST:     ACCCGTTGATTAATATCAACAAAAGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: ACCCGTTGATTAATATCAAC-AATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|18178582|gb|BM379792.1|BM379792
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|37393026|gb|CF633769.1|CF633769
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|19769895|gb|BQ034616.1|BQ034616
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60338997|gb|DN205970.1|DN205970
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|22520729|gb|BU079540.1|BU079540
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|9794824|gb|BE553132.1|BE553132
EST:     AACCCGGTGATTAATATCAATAATGCTGGCTCCTTCAGTGNTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACC
EST: gi|21891526|gb|BQ744739.1|BQ744739
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|22521454|gb|BU080265.1|BU080265
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGGGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|40334706|gb|CK368776.1|CK368776
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|28569026|gb|CB280901.1|CB280901
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAG
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAG
EST: gi|37392152|gb|CF633323.1|CF633323
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|17932392|gb|BM269352.1|BM269352
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|21828682|gb|BQ703366.1|BQ703366
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60344935|gb|DN211908.1|DN211908
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|211094643|gb|FL030915.1|FL030915
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|37378126|gb|CF625725.1|CF625725
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|18177522|gb|BM378732.1|BM378732
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|148965262|gb|EC906100.2|EC906100
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|84977485|gb|DW475907.1|DW475907
EST:     TGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: TGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|40335334|gb|CK369404.1|CK369404
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|24764934|gb|CA400095.1|CA400095
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|22542566|gb|BU093004.1|BU093004
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAG
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAG
EST: gi|166588107|gb|EG286626.1|EG286626
EST:     CTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: CTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|5607801|gb|AI901468.1|AI901468
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|76015323|gb|DT942493.1|DT942493
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|9794685|gb|BE552993.1|BE552993
EST:     AACCCGTTGATTAATATCAATAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|16920557|gb|BM074715.1|BM074715
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60394367|gb|DN227237.1|DN227237
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|60349874|gb|DN216847.1|DN216847
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
EST: gi|211453654|gb|FL478351.1|FL478351
EST:     AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAG                         GTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC
genomic: AACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTATTCAAGAATCAAGCACGAGGAGAGACCAAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACAAGCAGAAGAGGAGGCCAAGATGAAGGAGGCTGAACTGATGCGGGGAAACCCGTTGATTAATATCAACAATGCTGGCTCCTTCAGTGTTAAGAGAAGgtaggatgctgtcgcgagctgtactatggttttgttgtggcgtttggttgaaaccacaaatggattaatcttgtttggtgtctgtgctttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA