1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGCCTGTTGTTCCTGGTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacgctagacactatttgaggtagagggaaaagaatgactctgctttgactctgtttcaaactatggctatctgttgggcgttgtcag
species | Zea mays |
transcript | GRMZM2G061928_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211146692|gb|FK994974.1|FK994974
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211145267|gb|FK994967.1|FK994967
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211091461|gb|FK999164.1|FK999164
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211145265|gb|FK994965.1|FK994965
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211148126|gb|FK994994.1|FK994994
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGNCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAEST: gi|28930839|gb|CB334200.1|CB334200
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGA
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211098874|gb|FK999203.1|FK999203
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211091460|gb|FK999163.1|FK999163
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|74237956|gb|DT645870.1|DT645870
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211149576|gb|FK995007.1|FK995007
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCC-ATGATTGACCAG GGTGAAA-GGATGACAAGATAATAGCAGTCTEST: gi|211093927|gb|FK999180.1|FK999180
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATA-CNANTCTGTGCTGATGATCCTGAATAEST: gi|211270190|gb|FL112873.1|FL112873
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGC-AGTCTGTGCTGATGATCCTGAATA
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211143830|gb|FK994952.1|FK994952
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCC-ATGATTGACCAG GGTGAAAAGGATGACAAGATEST: gi|211148121|gb|FK994989.1|FK994989
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211270194|gb|FL112877.1|FL112877
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211093928|gb|FK999181.1|FK999181
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: TGCGAGCAAGAGCAATCGGCCTTANGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|32838675|gb|CD978353.1|CD978353
genomic: TGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|5325092|gb|AI783283.1|AI783283
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATTGGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATEST: gi|211143829|gb|FK994951.1|FK994951
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: GTTCGTTCCTGCGAGCAAGAGCAATCAGCCTTATGCCCATGATTGACCAG GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTG
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCCTGTTGTTCCTGGTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacgctagacactatttgaggtagagggaaaagaatgactctgctttgactctgtttcaaactatggctatctgttgggcgttgtcag
- - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - AGAGCA