Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCTGTTGTTCCTGGTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacgctagacactatttgaggtagagggaaaagaatgactctgctttgactctgtttcaaactatggctatctgttgggcgttgtcag

Basic information

species Zea mays
transcript GRMZM2G061928_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061928_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g59040.3 (Oryza sativa), 5'ss of exon 6
GAGCCTGTTGTTCCTGGTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacgctagacactatttgaggtagagggaaaagaatgactctgctttgactctgtttcaaactatggctatctgttgggcgttgtcag-------------
||||||||| |||||||||| ||||| || || |||||||| |||||||||||||||||||||||||||| |           || ||||  | | ||||||||  |       |  || ||||| |||     | |   | | |    | || | |  |             
GAGCCTGTTATTCCTGGTTCCTTCCTCCGTGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatattttctactgttctgtttgtagcaaagggaaaaagacctgcacgggttcactct-ttttgttttgttttttttttactgacgatattggattttgtgatcag

upper sequence: GRMZM2G061928_T04 (Zea mays), 5'ss of exon 6
lower sequence: PP1S46_53V6.1 (Physcomitrella patens), 5'ss of exon 7
GAGCCTGTTGTTCCTGGTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacgctagacactatttgaggtagagggaaaagaatgactctgctttgactctgtt-tcaaactatggctatctg-ttgggcgttgtcag---------------------------------
|| |||||| | |||||| ||||| | ||||||||||| || || ||||||||||||||||| || ||     ||  |  |  |  |      |   || ||   ||  |   ||  ||||   |||| ||| | | |   || ||  |    |  | |  |                                 
GAACCTGTTTTGCCTGGTACGTTCGTTCGAGCAAGAGCTATTGGGCTTATGCCCATGATTGATCAAgtgagggactatt-atgccgtactctttgacggaaaccaaactagcttgtattgatcatgttctcatattgttcgtacctaatcatccactatatgtaaatctaatgttaaatttgtaaggacctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211148121|gb|FK994989.1|FK994989
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|5770204|gb|AI973378.1|AI973378
EST:     GTTCGTTCCTGCGAGCAAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|74237956|gb|DT645870.1|DT645870
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|24768592|gb|CA403721.1|CA403721
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|31909409|gb|CD650904.1|CD650904
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|4834930|gb|AI670156.1|AI670156
EST:     TTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: TTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211328726|gb|FL322907.1|FL322907
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|5847103|gb|AW000182.1|AW000182
EST:     GTTCGTTCCTGCGAGCAAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|5847111|gb|AW000190.1|AW000190
EST:     GTTCGTTCCTGCGAGCAAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|78104561|gb|DV522979.1|DV522979
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60347915|gb|DN214888.1|DN214888
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATACCAATCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211146692|gb|FK994974.1|FK994974
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211145267|gb|FK994967.1|FK994967
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211091461|gb|FK999164.1|FK999164
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|5006060|gb|AI712122.1|AI712122
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60349652|gb|DN216625.1|DN216625
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|67012300|gb|CO441049.1|CO441049
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211402007|gb|FL112901.1|FL112901
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|7118905|gb|AW497510.1|AW497510
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|67017766|gb|CO446515.1|CO446515
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|5901415|gb|AW042515.1|AW042515
EST:     GTTCGTTCCTGCGAGCAAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60339231|gb|DN206204.1|DN206204
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211145265|gb|FK994965.1|FK994965
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211148126|gb|FK994994.1|FK994994
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGNCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGA
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGA
EST: gi|37379431|gb|CF626460.1|CF626460
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|6865274|gb|AW360624.1|AW360624
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGNCCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|28930839|gb|CB334200.1|CB334200
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211098874|gb|FK999203.1|FK999203
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|76012232|gb|DT939402.1|DT939402
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60348025|gb|DN214998.1|DN214998
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60344717|gb|DN211690.1|DN211690
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|28873765|gb|CB329709.1|CB329709
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211091460|gb|FK999163.1|FK999163
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211149576|gb|FK995007.1|FK995007
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCC-ATGATTGACCAG                         GGTGAAA-GGATGACAAGATAATAGCAGTCT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCT
EST: gi|60343029|gb|DN210002.1|DN210002
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|71759727|gb|DR957664.1|DR957664
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60396650|gb|DN229518.1|DN229518
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|32931451|gb|CF036263.1|CF036263
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|67012010|gb|CO440759.1|CO440759
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211093927|gb|FK999180.1|FK999180
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATA-CNANTCTGTGCTGATGATCCTGAATA
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGC-AGTCTGTGCTGATGATCCTGAATA
EST: gi|211270190|gb|FL112873.1|FL112873
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|32909251|gb|CF014063.1|CF014063
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211143830|gb|FK994952.1|FK994952
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCC-ATGATTGACCAG                         GGTGAAAAGGATGACAAGAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGAT
EST: gi|24764070|gb|CA399239.1|CA399239
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|5714350|gb|AI944335.1|AI944335
EST:     TTATGCCCATGATTGCCCAG                         GGTGAAAAGGATGCCAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: TTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60398608|gb|DN231424.1|DN231424
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|18177630|gb|BM378840.1|BM378840
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|67014869|gb|CO443618.1|CO443618
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|76285558|gb|DV025126.1|DV025126
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211067607|gb|FL464883.1|FL464883
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|5757339|gb|AI964626.1|AI964626
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|5296191|gb|AI782871.1|AI782871
EST:     GTTCGTTCCTGCGAGCAAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60399757|gb|DN232567.1|DN232567
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60339839|gb|DN206812.1|DN206812
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|9953369|gb|BE639952.1|BE639952
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|31909407|gb|CD650903.1|CD650903
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60346798|gb|DN213771.1|DN213771
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|6012425|gb|AW061862.1|AW061862
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211270194|gb|FL112877.1|FL112877
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|76285559|gb|DV025127.1|DV025127
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|113701996|gb|EE679500.1|EE679500
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCT-AATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|78104562|gb|DV522980.1|DV522980
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|14243411|gb|BG841076.2|BG841076
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60348523|gb|DN215496.1|DN215496
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|29129886|gb|CB380590.1|CB380590
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211093928|gb|FK999181.1|FK999181
EST:     TGCGAGCAAGAGCAATCGGCCTTANGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: TGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|31356747|gb|CD441104.1|CD441104
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|32838675|gb|CD978353.1|CD978353
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|60356641|gb|DN223614.1|DN223614
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|5325092|gb|AI783283.1|AI783283
EST:     GTTCGTTCCTGCGAGCAAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|37375185|gb|CF624015.1|CF624015
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|211143829|gb|FK994951.1|FK994951
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCAGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTG
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTG
EST: gi|60358335|gb|DN225308.1|DN225308
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
EST: gi|213191211|gb|FM191435.1|FM191435
EST:     GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT
genomic: GTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 452

GAGCCTGTTGTTCCTGGTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATCGTCACTACAACGACATCAGTGAGCTGTCTCCTCATCGCCTGCAAGAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 370

GAGCCTGTTGTTCCTGGTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATCGTCACTACAACGACATCAGTGAGCTGTCTCCTCATCGCCTGCAAGAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 452

GAGCCTGTTGTTCCTGGTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATCGTCACTACAACGACATCAGTGAGCTGTCTCCTCATCGCCTGCAAGAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 425

GAGCCTGTTGTTCCTGGTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTCTGTGCTGATGATCCTGAATATCGTCACTACAACGACATCAGTGAGCTGTCTCCTCATCGCCTGCAAGAGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCCTGTTGTTCCTGGTTCGTTCCTGCGAGCAAGAGCAATCGGCCTTATGCCCATGATTGACCAGgtatttcacgctagacactatttgaggtagagggaaaagaatgactctgctttgactctgtttcaaactatggctatctgttgggcgttgtcag

- - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - -  AGAGCA