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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGAACACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtcttgagtgtattttccaattgcatattattttatttatgccacaccctaagtatctcttttatttgtcaattaag

Basic information

species Zea mays
transcript GRMZM2G061745_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g56646.1 (Oryza sativa), 5'ss of exon 6
GAGTTGAACACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgtta-atgtcttgag----tgtattttccaattgcatattattttatttatgccacaccctaagtatctcttttatttgtcaattaag
||||||| || ||||| ||||||||||||||||||||||||||||| ||||| |||||||| | || ||   ||    || ||||||    | ||  ||  |||||| |||||  |   ||    |     || || |||| | |||
GAGTTGAGCATCTTCTGAGGGATGTCAAGGACACAACAATAAGCACGCTTGCGACAGAGgtaatatttcacaagaatatgcattttcagcctacaagttgctttatt-atgccctaatatatcctttatcattgtt-gtcattaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348273|gb|DN215246.1|DN215246
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|211382592|gb|FK956034.1|FK956034
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|211385219|gb|FK956040.1|FK956040
EST:     CCTTCCYAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: CCTTCT-AAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|148958380|gb|EC904610.2|EC904610
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATG
EST: gi|211382593|gb|FK956035.1|FK956035
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|211382591|gb|FK956033.1|FK956033
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|149013823|gb|EE043297.2|EE043297
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTANGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|50325946|gb|CO521072.1|CO521072
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|211385218|gb|FK956039.1|FK956039
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|76015327|gb|DT942497.1|DT942497
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|149014660|gb|EE044326.2|EE044326
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|149081616|gb|EE170759.2|EE170759
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|30705314|gb|CD058743.1|CD058743
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|211382590|gb|FK956032.1|FK956032
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCYTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|67017978|gb|CO446727.1|CO446727
EST:     CCTTCTANAGG-ATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGGACTCGATGCA-GGCTTANGGA
genomic: CCTTCTA-AGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGG-ACTCGATGCAAGGCTTAGGGA
EST: gi|91055801|gb|EB166219.1|EB166219
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGA
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGA
EST: gi|211382594|gb|FK956036.1|FK956036
EST:     CCTTCMTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: CCTTC-TAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|78081122|gb|DV509534.1|DV509534
EST:     ACCTTCTAAGGGATGTCAGGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTAAAAGGGACTCGATGCAAGGCTTANGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|26456947|gb|CA828530.1|CA828530
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAA
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAA
EST: gi|148960678|gb|EE011309.2|EE011309
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTNAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|148943844|gb|EC888923.2|EC888923
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTNAAGGGACTCGATGCAAGGCTT
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTT
EST: gi|148935087|gb|EC879128.2|EC879128
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|149107089|gb|EE188981.2|EE188981
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|148971131|gb|EE021979.2|EE021979
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|211385220|gb|FK956041.1|FK956041
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|211385221|gb|FK956042.1|FK956042
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|62525906|gb|DN828554.1|DN828554
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTT
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTT
EST: gi|211385222|gb|FK956043.1|FK956043
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
EST: gi|149072304|gb|EE160567.2|EE160567
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATTGCA-GGCTTAGGGA
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGAT-GCAAGGCTTAGGGA
EST: gi|211385224|gb|FK956045.1|FK956045
EST:     ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAG                         GTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG
genomic: ACCTTCTAAGGGATGTCAAGGACACAACAATAAGCACACTTGCTACAGAGgttaatgtct ... gtcaattaagGTCACTAGCAAGCTTGCAGCCTTAAAGGGACTCGATGCAAGGCTTAGGGAG