1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGCATAGTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGATgtaaagttgtcctttgatgccttgcccttttcaagtttagttgcttaggtatactttgttgatatagatctgaactctgtag
species | Zea mays |
transcript | GRMZM2G060896_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGAT GTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGTEST: gi|87153794|gb|DY398583.1|DY398583
genomic: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGATgtaaagttgt ... aactctgtagGTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGT
EST: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGAT GTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGTEST: gi|19057747|gb|BM736414.1|BM736414
genomic: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGATgtaaagttgt ... aactctgtagGTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGT
EST: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGAT GTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGTEST: gi|19058302|gb|BM736969.1|BM736969
genomic: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGATgtaaagttgt ... aactctgtagGTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGT
EST: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGAT GTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGTEST: gi|74240569|gb|DT648483.1|DT648483
genomic: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGATgtaaagttgt ... aactctgtagGTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGT
EST: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGAT GTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTTCA-GATCCTCGEST: gi|22490603|gb|BU050526.1|BU050526
genomic: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGATgtaaagttgt ... aactctgtagGTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTT-CAAGATCCTCG
EST: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGAT GTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGTEST: gi|148946476|gb|EC891786.2|EC891786
genomic: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGATgtaaagttgt ... aactctgtagGTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGT
EST: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGAT GTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGT
genomic: GTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGATgtaaagttgt ... aactctgtagGTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTATTGGTGGTGGTGATGGAGGTGTACTTCGAGAGGTATCCAGGCATAGTTCAGTGGAGTCCATTGACATATGTGAGATTGATCAGCTGGTTATTGATgtaaagttgtcctttgatgccttgcccttttcaagtttagttgcttaggtatactttgttgatatagatctgaactctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG