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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGCATCTTCTCTATAGTTGCAGCTATTGTTGGTAGCGAGGAGCTTTCAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcccttaactgtctttttgcaaatctccatagcaaatgtctcagttctgataatcctatgccacattcttttgcagggtttgtgcatgtatgcaggtatataactcattcttttcttctcgcaaccttactgatcagggctcttgtgaaccaaaccctcacatatccttcttgtggcattgaa

Basic information

species Zea mays
transcript GRMZM2G060564_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060564_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g03180.1 (Oryza sativa), 5'ss of exon 6
-TGCTTGCATCTTCTCTATAGTTGCAGCTATTGTTGGTAGCGAGGAGCTTTCAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcccttaactgtctt-tttgcaaatctccatagc-aaatgtctcagttctgataatcctatgccacattcttttgcagggtttgtgcatgtatgcaggtatataactcattcttttcttctcgcaaccttactgatcagggctcttgtgaaccaaaccctcacatatccttcttgtggcattgaa
 |||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||   ||  |||||||| ||||||||||  ||||||  | | | ||||| | || ||| |   |||||||||  || |  | || |  |||||||| | || |       | ||||   ||| |   | | |||||                                                                                        
TTGCTTGTATCTTCTCTATAGTTGCCGCTATTGTTGGTAGTGAAGAGCTTTCAGAGGCTTCCCAAATCCTTTCCTGCTTGTCTGATATGGTCTACTGCTCgtaag--ctctcataactctgttattttctcttctccatagttaagtcccccaatgttgataatcttgtgac------ctgtgcaccattttt---tttttgcag----------------------------------------------------------------------------------------

upper sequence: GRMZM2G060564_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT4G23470.3 (Arabidopsis thaliana), 5'ss of exon 6
-TGCTTGCATCTTCTCTATAGTTGCAGCTATTGTTGGTAGCGAGGAGCTTTCAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgccctt----aactgtc-tttttgcaaatctccatagcaaatgtctcagttctgataatcctatgccacattcttttgcagggtttgtgcatgtatgcaggtatataactcattcttttcttctcgcaaccttactgatcagggctcttgtgaaccaaaccctcacatatccttcttgtggcattgaa
  |||||||| ||||| |||||||||  |||||| ||||  || ||||||||||| ||||| ||||| || |  |||   |||||  |||| ||||| |||||||    |||      || || | || ||  || | || ||   ||     |     |  ||  ||||     |   |  |||||  ||| ||                                                                                                     
TGGCTTGCATATTCTCCATAGTTGCATGTATTGTCGGTATGGATGAGCTTTCAGAAGCTTCTCAGATACTCACATGTTGCTCTGACATGGTGTACTGCACgtaagaatcccccatccaaagtgccattcttataagtttcgatcaaaacccaattttaacctattgtcctgatatatcgtactttgcttggtctgcag--------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G060564_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT1G63830.1 (Arabidopsis thaliana), 5'ss of exon 7
-TGCTTGCATCTTCTCTATAGTTGCAGCTATTGTTGGTAGCGAGGAGCTTTCAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcccttaactgtctttttgcaaatctccatagcaaatgtctcagttctgataatcctatgccacattcttttgcagggtttgtgcatgtatgcaggtatataactcattcttttcttctcgcaaccttactgatcagggctcttgtgaaccaaaccctcacatatccttcttgtggcattgaa
 ||||||||| ||||||||||||||    ||||||||||| || || ||||| |||||||| ||||| ||   |||     ||||| |||||||||| ||||  |      |||   |||  ||||   | ||||| |  | ||| | |   |  | |  |     ||| |   | ||||||  ||| |     |   |||||                                                                                        
TTGCTTGCATATTCTCTATAGTTGCTTGCATTGTTGGTAGTGATGAACTTTCCGAGGCTTCTCAGATACTCTCTTGCTGTGCTGATATGGTCTACTGCACgtctgtatttacttc-ttgtgatttttagattctccct--ctaatctattcatgttcacgaat---tgcta--atattttgc--ggtcttgattttcttgcag----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71449020|gb|DR830070.1|DR830070
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|78078643|gb|DV507055.1|DV507055
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|91048377|gb|EB158795.1|EB158795
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|50336576|gb|CO531702.1|CO531702
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|101399172|gb|EB821460.1|EB821460
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|71330287|gb|DR801905.1|DR801905
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|74234235|gb|DT642149.1|DT642149
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|26456824|gb|CA828407.1|CA828407
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|76284637|gb|DV024205.1|DV024205
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|148953515|gb|EE153023.2|EE153023
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|149095487|gb|EE181140.2|EE181140
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|20512803|gb|BQ280001.1|BQ280001
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGCCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|71447386|gb|DR828436.1|DR828436
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|74246183|gb|DT654097.1|DT654097
EST:     CAGAGGCTCCCCAGATCTTTAA-TGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCA--AATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|76014988|gb|DT942158.1|DT942158
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|148937865|gb|EC882083.2|EC882083
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|148949975|gb|EC895492.2|EC895492
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|74245152|gb|DT653066.1|DT653066
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|149089290|gb|EE178503.2|EE178503
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|71321160|gb|DR797280.1|DR797280
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|71311330|gb|DR791989.1|DR791989
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|78107038|gb|DV525456.1|DV525456
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|71312763|gb|DR792909.1|DR792909
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|71768464|gb|DR966401.1|DR966401
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|71315575|gb|DR794393.1|DR794393
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
EST: gi|50337111|gb|CO532237.1|CO532237
EST:     CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACG                         GTTTGTGCATGTATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT
genomic: CAGAGGCTTCCCAGATCCTTAATTGTCTGTCTGATTTGGTCTACTGGACGtaaggccgcc ... tggcattgaaATAAATGCAA--ATGCAGACGCAGCACAAAGTCGAAATGGACAAGAGGGAT