Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAAGGGATGAACTATCTTCATAAGCGTAATCCTCCAATAGTCCACCGGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatttccgatattgcttttactttcattaggaaaaagcttgccttcagtgacttaacgatatcacagtattaaaatttataactttatgattca...

Basic information

species Zea mays
transcript GRMZM2G059671_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059671_T04 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os02g32610.4 (Oryza sativa), 5'ss of exon 12
GCAAAAGGGATGAACTATCTTCATAAGCGTAATCCTCCAATAGTCCACCGGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatttccgatattgcttttactttcattaggaaaaagcttgccttca-gtgacttaacgatatcacagtattaaaatttataactttatgattca---
|| || |||||||| || ||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||    |||    ||    |||| |  |  ||    |   | |||  ||||  | |||    |   |     |  | |  |||   ||||| |  ||     
GCTAAGGGGATGAATTACCTTCACAAGCGCAATCCTCCTATAGTCCACCGGGATCTAAAGTCACCAAATCTGTTGGTTGATAAAAAGTACACTGTGAAGgtatatccttt----tacccattttgccatattttaagacctgtttgatttcacattactctttgtggtactttttgttattttttctactttgtttttggaca

upper sequence: GRMZM2G059671_T04 (Zea mays), 5'ss of exon 11
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 11
GCAAAAGGGATGAACTATCTTCATAAGCGTAATCCTCCAATAGTCCACCGGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatttccgatattgcttttactttcattaggaaaaagcttgcct------tcagtgacttaacgatatcacagtattaaaatttataactttatgattca---
|| || || ||||| ||||||||||| || |||||||| || || || || ||| | ||||| |||||||| |||||||||||||| ||||| ||||| ||| ||       |  ||  |||   ||| ||  ||  | | |  | | |      ||| ||   || |   | |  ||| ||      |   ||||| || ||     
GCCAAGGGCATGAATTATCTTCATAAACGCAATCCTCCCATTGTTCATCGAGATTTGAAGTCTCCAAACCTTTTGGTTGACAAAAAATACACCGTGAAGgtaagag-----tggaatatcttgagcttgca--agatagacgtctacttcgataatcaatgttctagc--caccttagttttgctgccttgcactttttgttttgatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20802940|gb|BQ293990.1|BQ293990
EST:     GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|76284240|gb|DV023808.1|DV023808
EST:     GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|67042437|gb|CO468692.1|CO468692
EST:     GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|149096725|gb|EE182499.2|EE182499
EST:     GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|113703759|gb|EE681263.1|EE681263
EST:     GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|26456437|gb|CA828020.1|CA828020
EST:     GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|88757722|gb|DY541863.1|DY541863
EST:     TTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: TTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|20336958|gb|BQ172588.1|BQ172588
EST:     GGGATCTTGAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|60358265|gb|DN225238.1|DN225238
EST:     GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|60357002|gb|DN223975.1|DN223975
EST:     GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|60337361|gb|DN204334.1|DN204334
EST:     GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|71445940|gb|DR826990.1|DR826990
EST:     GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
EST: gi|78544345|gb|DV621843.1|DV621843
EST:     GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAA                         GTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC
genomic: GGGATCTTAAGTCACCAAACCTGTTGGTTGACAAAAAGTACACTGTGAAAgtatgaaatt ... tattctgcagGTCTGTGACTTTGGTCTCTCCAGATTGAAGGCAAACACATTTCTGTCTTCC