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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTAGGAAACGTTTTGACAAGGCTACCCTTCTTTATGACCAGgtaatgcttcggcgctatttcgtatggccgtacaagtagattcaaaatcttgtataatacttattatggtagaaatgatctattgtcccattctatttac...

Basic information

species Zea mays
transcript GRMZM2G059225_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 6
GATGCTAGGAAACGTTTTGACAAGGCTACCCTTCTTTATGACCAGgtaatgcttcggcgctatt-tcgtatggccgtacaagtagattcaaaatcttgtataatacttattatggtagaaatgatctattgtcccattctatttac
||||| ||||| |||||||||||||||| |||||| ||||||||||| |         | |  | || | | ||  | ||| ||   | |  | |||||     |    | | |||   | |   | ||| | |     | |    
GATGCCAGGAAGCGTTTTGACAAGGCTAGCCTTCTCTATGACCAGgtgacataataatgtttctatcatctcgctctccaa-tatgataatcaacttgtgctggaaccttgaaggttccattagccaattatacgtaggtgtagct

upper sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 6
GATGCTAGGAAACGTTTTGACAAGGCTACCCTTCTTTATGACCAGgtaatgcttcggc--gctatttcgtatggccgtacaa-gtagattcaaaat--cttgtataatacttattatggtagaaatgatctattgtcccattctatttac---------------------------------------------------------
|| ||  ||||||| ||||||||||||| |||| |||||||||||||      ||     |  |||   | |     | | | ||||||||    |   |||   ||||   ||  |     | |    ||||  |      | |                                                              
GAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGgtgcattctcaatcagaaattatttctaattttcccatgtagattcctcttgctttgagcaatatggatgctaa-gcatactgcctatgataatgagccaacagtgttagaagctgcaaaatgaagtttctctaatgattggaaaatatgctattcttgcag

upper sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 6
GATGCTAGGAAACGTTTTGACAAGGCTACCCTTCTTTATGACCAGgta-atgcttcggcgc----tatttcgtatggccgtacaagtagattcaaaatcttgtataatacttattatggtagaaatgatctattgtcccattctatttac
|| ||  ||||||| ||||||||||||| |||| |||||||||||||  || ||    | |    ||||||  ||  ||  |    ||           ||| | |||  |    ||    || ||   ||| |      |  |      
GAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGgtgcattctcaatcacaaattatttctaatttccccatgtatattcctcctgctttgaaaaatgttggagat--ccgacatcgactagtaatgactaatgag---